Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021052
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    36   0.050
02_01_0269 + 1788788-1789508,1789629-1789658,1790127-1790368,179...    36   0.050
04_04_0549 - 26179668-26181176                                         32   0.61 
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837     31   1.4  
01_06_1386 - 36936304-36937728                                         30   2.5  
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195...    29   3.3  
04_01_0016 - 249026-249049,250193-250606                               29   3.3  
10_01_0120 - 1480288-1481160                                           29   5.7  
04_04_0550 - 26187347-26188828                                         29   5.7  

>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 504 KSRPLCIMINWLLARQKHVMKYATLYLEQGFDVLS 608
           KS+ + +++ WL +RQKH+ +YA  Y  +G+  ++
Sbjct: 137 KSQTVVVLLGWLGSRQKHLKRYADWYTSRGYHAVT 171


>02_01_0269 +
           1788788-1789508,1789629-1789658,1790127-1790368,
           1790595-1790803,1791924-1792182
          Length = 486

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 516 LCIMINWLLARQKHVMKYATLYLEQG 593
           L +++ WL ARQKH+ +YA LY ++G
Sbjct: 109 LVVLLGWLGARQKHLRRYADLYRDRG 134


>04_04_0549 - 26179668-26181176
          Length = 502

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 600 VLSVSCTPWQLMWPMKGSQLVAGDVLKFMASN 695
           V  VSC PW ++W +KG+  + GDV +++  N
Sbjct: 317 VALVSC-PWPVLWVIKGAGSLPGDVKEWLCEN 347


>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
          Length = 730

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 672 RHRQLAAIPSWATLAATECTTP 607
           RHR L A+P W  LA  + TTP
Sbjct: 89  RHRPLPAVPGWQLLAVADETTP 110


>01_06_1386 - 36936304-36937728
          Length = 474

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 690 SNENEQPLVVHRVLDCWIHVGRSLLHVMNNR 782
           + ENE    +H++L+ W+     LL  +NNR
Sbjct: 239 NKENEALFTIHQILESWLCAASQLLTRLNNR 269


>04_04_0059 +
           22418795-22418908,22419064-22419202,22419437-22419525,
           22420428-22420690,22420793-22420883,22420966-22421325
          Length = 351

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 582 LEQGFDVLSVSCTPWQLMWPMKGSQLVAGDVL 677
           LE G D  S  C     +WP +GS ++AGDVL
Sbjct: 53  LEVGDDTRSRFCVS---LWPKRGSSVLAGDVL 81


>04_01_0016 - 249026-249049,250193-250606
          Length = 145

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -1

Query: 751 PTCIQQSRTRCTT-RGC--SFSFEAMNLRTSPATSCDPFMGHISCHG 620
           P C       CTT  GC     FE + L   P T+    M HI CHG
Sbjct: 49  PACEITHLVMCTTVSGCMPGADFEVVKLLGLPLTTKRCMMYHIGCHG 95


>10_01_0120 - 1480288-1481160
          Length = 290

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 515 SLHNDQLATGPT---EARYEIRDAVLGAGVRRALGVVH 619
           +LH D   T P    +AR  +RD V  AG  RA GV+H
Sbjct: 132 TLHLDLWMTHPDPEEKARLVMRDLVAAAGALRAAGVMH 169


>04_04_0550 - 26187347-26188828
          Length = 493

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 609 VSCTPWQLMWPMKGSQLVAGDVLKFMASNENEQPLVVHRVLDCWI 743
           VSC PW  +W   G+  + GDV  ++  N +    V H    C +
Sbjct: 311 VSC-PWPTLWVFNGADTLPGDVRDWLRENTDADG-VAHAHSKCLV 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,364
Number of Sequences: 37544
Number of extensions: 401065
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)