Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021052
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0)                      29   3.3  
SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2)                      29   5.8  

>SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/73 (23%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +3

Query: 513 PLCIMINWLLARQKHVMKYATLYLEQGFDVLSVSCTPWQLMWPMKGSQL--VAGDVLKFM 686
           P+ I++ W  ++  H+ KY+ L+ ++ F  + V+  P+   +   GS++  ++  +LK +
Sbjct: 66  PVVIILGWNSSKDNHLRKYSELFEKRHFSTVRVTANPFNTFF-RSGSKVKFISHYILKTL 124

Query: 687 AS-NENEQPLVVH 722
           +  N  E+P+ ++
Sbjct: 125 SEYNLTEKPVFLY 137


>SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0)
          Length = 294

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = +2

Query: 500 SKEQASLHNDQLATGPTEARYEIRDAVLGAGVRRALGVVHSVAANV-AHEGIAASCR--* 670
           S+  A+LH + +AT P  A Y        A +  AL +V  +   V A E   ASCR   
Sbjct: 168 SEPLANLHTNTIATSPLHAGYGSSPLTPSARI-SALNIVGDLLRKVGALESKLASCRNFV 226

Query: 671 RSQIHGFERE*AAPRGAPGSRLLDTCGEKFTARH 772
           + Q H       +   +   R+  T G+  T  H
Sbjct: 227 KEQPHNMRGSTGSSSPSDSPRIKSTRGDLLTFIH 260


>SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2)
          Length = 117

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 768 RAVNFSPHVSSNREPGAPRGAAHSRSK 688
           + V F P V+ N  P  PR AA+SRSK
Sbjct: 91  KEVVFQPKVAQNLIPTQPRKAANSRSK 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,411,261
Number of Sequences: 59808
Number of extensions: 481090
Number of successful extensions: 1225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)