Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021052
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical pr...    41   9e-04
AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical ...    37   0.015
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    31   0.73 
U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical
           protein C09B8.4 protein.
          Length = 289

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +3

Query: 483 NNETGPAKSRPLCIMINWLLARQKHVMKYATLYLEQGFDVLSVSCTP 623
           + +   + S+P+ +MI W  A  KH+ KY+ LY ++G+DV ++ C P
Sbjct: 45  STKANASTSKPVVLMIGWAGAANKHMEKYSKLYNDKGYDV-ALICPP 90


>AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical
           protein T10B11.6 protein.
          Length = 325

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +3

Query: 504 KSRPLCIMINWLLARQKHVMKYATLYLEQGFDVLSVSCTP 623
           + +P+ +M+ W  A  KH+ KY  +Y ++G+ V+S+ C P
Sbjct: 66  EKKPVILMVGWAGANPKHIDKYIKVYNDEGYRVVSL-CPP 104


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = -1

Query: 766  CSKLLPTCIQQSRTRCTTRGCSFS-FEAMNLRTSPATSCDPFMGHISCHGVHDTESTSNP 590
            CSKL   C+     +C  R C+   FE  N++       D      +C G+   E     
Sbjct: 1835 CSKLCALCVNNCSNKCAHRSCTLKCFEECNVKPCTEPCTDKLKCGHACLGICG-EQCPKI 1893

Query: 589  CSKYSVAYFITCFCRASS 536
            C       +I C    SS
Sbjct: 1894 CGTCERNKYIECVSGTSS 1911


>U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical
           protein T07D1.2 protein.
          Length = 432

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 388 DGRLRAYAHSQDITKNIQYISNEKVKLTTDPKTMK 492
           DG +R Y H+Q IT NI+  SN   K   D +  K
Sbjct: 210 DGNIRTYLHTQLITDNIELGSNNYDKAVKDLRRFK 244


>Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical
           protein F19C6.5 protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 631 SCHGVHDTESTSNPCSKYSVAYFITCFCRASSQLIIMQRGLLFAGPVSLFSDPLLV 464
           S H    T S  N      V +FI  F   SS LII+ +  L A  ++ ++  LL+
Sbjct: 168 SYHSSLYTGSKRNQLMHGFVYHFIAYFVLVSSLLIIVNKDYLIADVITTYATSLLI 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,411,006
Number of Sequences: 27780
Number of extensions: 361444
Number of successful extensions: 969
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)