Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021051
(768 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 188 1e-46
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 153 6e-36
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 150 3e-35
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 150 4e-35
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 149 7e-35
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 142 9e-33
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 142 9e-33
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 139 6e-32
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 137 2e-31
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 136 4e-31
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 136 4e-31
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 134 2e-30
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 134 2e-30
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 121 2e-26
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 66 9e-10
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 64 4e-09
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 62 1e-08
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 61 3e-08
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 61 3e-08
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 60 4e-08
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 59 1e-07
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 58 2e-07
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 58 2e-07
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 57 4e-07
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 57 4e-07
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 55 2e-06
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 55 2e-06
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 55 2e-06
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 55 2e-06
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 54 3e-06
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 54 5e-06
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 54 5e-06
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 53 7e-06
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 52 2e-05
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 52 2e-05
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 52 2e-05
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 51 3e-05
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 51 4e-05
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 51 4e-05
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 51 4e-05
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 50 5e-05
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 50 6e-05
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 50 6e-05
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 50 6e-05
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 50 8e-05
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 50 8e-05
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 50 8e-05
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 49 1e-04
UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)... 49 1e-04
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 48 2e-04
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 48 2e-04
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 48 3e-04
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 46 8e-04
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 45 0.002
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 45 0.002
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 45 0.002
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 43 0.007
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 43 0.007
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 42 0.017
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 40 0.068
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 39 0.12
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 39 0.16
UniRef50_A0S6X5 Cluster: Microtubule-associated protein; n=2; Ni... 34 4.5
UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.5
UniRef50_UPI00015A5797 Cluster: UPI00015A5797 related cluster; n... 33 7.8
UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: ... 33 7.8
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 188 bits (458), Expect = 1e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK
Sbjct: 1462 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 1521
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TNITSQFGPLTCMRLTGEPGTYDDN
Sbjct: 1522 TNITSQFGPLTCMRLTGEPGTYDDN 1546
Score = 187 bits (455), Expect = 3e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF
Sbjct: 1377 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 1436
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
GPIKKYQRVFDSKDRPPNLFVYGGQ
Sbjct: 1437 GPIKKYQRVFDSKDRPPNLFVYGGQ 1461
Score = 182 bits (443), Expect = 9e-45
Identities = 84/87 (96%), Positives = 85/87 (97%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH
Sbjct: 1293 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 1352
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
PNHKVPFQPDLFVECINLNEYSQL +
Sbjct: 1353 PNHKVPFQPDLFVECINLNEYSQLSNK 1379
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 153 bits (370), Expect = 6e-36
Identities = 64/85 (75%), Positives = 78/85 (91%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++KTQAVI NA RSDPDWR++AVRIFSKTQHK+NEGSIFG WKACQTLALMHDA+VL+
Sbjct: 1448 TSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLL 1507
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
GP+KKYQRVFD++DRP +L+++ GQ
Sbjct: 1508 GPVKKYQRVFDARDRPAHLYIHAGQ 1532
Score = 134 bits (324), Expect = 2e-30
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP +S + +HL P + + NDY+AFDQSQHGEAVVLERKKMERLSIP HLI LH ++K
Sbjct: 1533 TPSSMSLWCQTHLTPA-VKLANDYTAFDQSQHGEAVVLERKKMERLSIPDHLISLHVHLK 1591
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
T++ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1592 THVETQFGPLTCMRLTGEPGTYDDN 1616
Score = 119 bits (287), Expect = 7e-26
Identities = 54/87 (62%), Positives = 68/87 (78%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q ++++AP HDSK+DPTLL+ASI KRLRFRPS PYR+SP DE+LG L+ SLCRAY R
Sbjct: 1364 QPMTLLAPIHDSKHDPTLLAASIQKRLRFRPSASPYRISPRDELLGQLLYESLCRAYHRS 1423
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
P PF LFVECI+LNE++QL ++
Sbjct: 1424 PTTTHPFDEALFVECIDLNEFAQLTSK 1450
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 150 bits (364), Expect = 3e-35
Identities = 64/84 (76%), Positives = 75/84 (89%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQA I NA RSDPDWR++AVRIFSKTQHK+NEGSIFG WKACQTLALMHDA+VLI
Sbjct: 1586 SSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMHDAVVLIL 1645
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGG 505
GP+KKYQRVFD +DRP +L+++ G
Sbjct: 1646 GPVKKYQRVFDQRDRPRHLYIHAG 1669
Score = 130 bits (315), Expect = 3e-29
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP +S + HL + + NDY+AFDQSQHGEAVVLERKKMERLSIP LIDLH ++K
Sbjct: 1671 TPSQMSNWCQQHLTTA-VKLANDYTAFDQSQHGEAVVLERKKMERLSIPQALIDLHIHLK 1729
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
T++++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1730 THVSTQFGPLTCMRLTGEPGTYDDN 1754
Score = 112 bits (269), Expect = 1e-23
Identities = 51/87 (58%), Positives = 62/87 (71%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q +S++A H K DPTLL ASI KRLRFRPS PY+++P DE+LG LF LCRAY R
Sbjct: 1502 QPMSLLAAIHQEKQDPTLLPASIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAYHRS 1561
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
P H F P LF ECINLNE++QL ++
Sbjct: 1562 PFHTEAFDPVLFAECINLNEFAQLSSK 1588
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 150 bits (363), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQA I ANANRSDPDWR++AVRIF+KTQHK+NEGS+FG WKACQTLALMHDA+VL+
Sbjct: 1407 SSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAVVLLL 1466
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGG 505
GP+KKYQR FD +DRP L+V+ G
Sbjct: 1467 GPVKKYQRFFDQRDRPSTLYVHAG 1490
Score = 133 bits (321), Expect = 5e-30
Identities = 57/85 (67%), Positives = 72/85 (84%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP++++ + +HL P + + NDY+AFDQSQHGEAVV ER KM RLSIP+ L+DLH Y+K
Sbjct: 1492 TPFEMADWCRAHLTPA-VKLANDYTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLK 1550
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1551 TNVSTQFGPLTCMRLTGEPGTYDDN 1575
Score = 115 bits (277), Expect = 1e-24
Identities = 51/87 (58%), Positives = 66/87 (75%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
QT S++AP H+SK+DPTLL ASI KRLRFR S PY ++P DE+LG+ L+ + CRAY R
Sbjct: 1323 QTSSLLAPLHNSKHDPTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRAYHRS 1382
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
P PF PDL+ ECINLNE++QL ++
Sbjct: 1383 PRDVEPFDPDLYAECINLNEFAQLSSK 1409
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 149 bits (361), Expect = 7e-35
Identities = 65/90 (72%), Positives = 79/90 (87%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQA+I AN +RSDPDWR++AVRIF+KTQHK+N+ SIFG WKACQTLALMHDA+VL+
Sbjct: 1480 SSKTQAIIMANRDRSDPDWRWSAVRIFAKTQHKVNDHSIFGGWKACQTLALMHDAVVLLL 1539
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQLHTIS 523
GP+KKYQR+FD+ DRP N+FVY G HT S
Sbjct: 1540 GPVKKYQRIFDAADRPANIFVYAG--HTPS 1567
Score = 136 bits (330), Expect = 4e-31
Identities = 60/85 (70%), Positives = 75/85 (88%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP +++ + ++LKP + V NDY++FDQSQHGEAVV ERKKMERL+IPSHLIDLH ++K
Sbjct: 1565 TPSEMANWCRANLKPGE-RVANDYTSFDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLK 1623
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1624 TNVSTQFGPLTCMRLTGEPGTYDDN 1648
Score = 86.2 bits (204), Expect = 8e-16
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +3
Query: 51 TLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECI 230
T L ASI KRLRFRPS PYR++ DE+LG+ LF + C A R P+ VPF +LF ECI
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAECI 1471
Query: 231 NLNEYSQLPTR 263
LNE++QL ++
Sbjct: 1472 ALNEFAQLSSK 1482
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 142 bits (344), Expect = 9e-33
Identities = 61/91 (67%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++KTQA IQANA RSDPDWR+T VRIFSKTQHK+NE S+F WKACQTLALMHD ++L+
Sbjct: 1582 TSKTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLFTSWKACQTLALMHDYLILVL 1641
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQL-HTIS 523
GP+KKYQR+ DS+DRP +L+++ GQ H +S
Sbjct: 1642 GPVKKYQRILDSRDRPAHLYIHAGQTPHQLS 1672
Score = 127 bits (306), Expect = 3e-28
Identities = 57/85 (67%), Positives = 66/85 (77%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP+ LS + +HL P +H+ NDY+AFDQSQHGEAVVLE KM R SIP I LH ++K
Sbjct: 1667 TPHQLSEWCQNHLTP-SVHLANDYTAFDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVK 1725
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TNI QFGPLTCMR+TGEPGTYDDN
Sbjct: 1726 TNIECQFGPLTCMRITGEPGTYDDN 1750
Score = 91.5 bits (217), Expect = 2e-17
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +3
Query: 9 LSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPN 188
L+++AP H+ K DPTLL AS+AKRLRFR S PY ++ D+ LG L+ SL RAY R P
Sbjct: 1501 LTLVAPTHNQKQDPTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSP- 1559
Query: 189 HKVPFQPDLFVECINLNEYSQLPTR 263
VPF P LF CI N+++QL ++
Sbjct: 1560 EPVPFDPVLFASCIAENDFAQLTSK 1584
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 142 bits (344), Expect = 9e-33
Identities = 57/85 (67%), Positives = 75/85 (88%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQ+ I ANA+RSDPDWR+T V+IF+K QHK+N+GSIFG WKACQTLALMHD ++L+
Sbjct: 1471 SSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYVILVL 1530
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
GP+KKYQR+FD+ DRPPN++ + G+
Sbjct: 1531 GPVKKYQRIFDNADRPPNIYSHCGK 1555
Score = 126 bits (304), Expect = 6e-28
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP L + HL + NDY+AFDQSQHGE+VVLE KM+RL+IPSHLI LH ++K
Sbjct: 1556 TPNQLRDWCQEHLTHSTPKIANDYTAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLK 1615
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1616 TNVSTQFGPLTCMRLTGEPGTYDDN 1640
Score = 111 bits (267), Expect = 2e-23
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q S+I+ KH +DPTLL ASI KRLRFRPS P++++ D VLG LF SLCRAY R
Sbjct: 1387 QPSSLISAKHAPNHDPTLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQ 1446
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
PN VPF P+LF ECI+LNEY+QL ++
Sbjct: 1447 PNSTVPFNPELFAECISLNEYAQLSSK 1473
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 139 bits (337), Expect = 6e-32
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = +2
Query: 251 ASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLI 430
+SNKT++ I ANA+RSDPDWR TAV+IFSKTQHKINE SIFG WKACQTLALMHD +VL
Sbjct: 1403 SSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYVVLF 1462
Query: 431 FGPIKKYQRVFDSKDRPPNLFVYGG 505
GP+K YQR+FDS++RP N++ + G
Sbjct: 1463 LGPVKIYQRIFDSQERPANVYYHAG 1487
Score = 122 bits (294), Expect = 1e-26
Identities = 56/85 (65%), Positives = 66/85 (77%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
+P ++S +A HL+ H NDY+AFDQSQHGEAVV E KM RLSIP LI+LH Y+K
Sbjct: 1489 SPLEMSEWAQKHLQSGISHT-NDYTAFDQSQHGEAVVFEMAKMRRLSIPESLINLHSYLK 1547
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
N+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1548 RNVDTQFGPLTCMRLTGEPGTYDDN 1572
Score = 106 bits (255), Expect = 5e-22
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q+ ++IA KHDSK DPTLL ASI KRL FRPS Y+LS D++LG L+ S CRAY RH
Sbjct: 1320 QSSTLIAAKHDSKRDPTLLVASITKRLCFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRH 1379
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTRLK 269
P VPF LF ECIN+NE++Q + K
Sbjct: 1380 PQAVVPFDELLFAECININEFAQSSNKTK 1408
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 137 bits (332), Expect = 2e-31
Identities = 56/84 (66%), Positives = 73/84 (86%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQA I ANA+RSDPDWR+T V+IF+K+QHK+N+GSIFGPWKACQTLALMHD ++L
Sbjct: 1374 SSKTQATIVANASRSDPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQTLALMHDYVILTL 1433
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGG 505
GP+KKYQR+FD +RP +++ + G
Sbjct: 1434 GPVKKYQRLFDQLERPSHIYYHAG 1457
Score = 126 bits (303), Expect = 8e-28
Identities = 58/85 (68%), Positives = 67/85 (78%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP+DL R+ S HL+ NDY+AFDQSQHGEAVV E KM RLSIP +LI LH ++K
Sbjct: 1459 TPHDLRRWCSKHLETSHC-TTNDYTAFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLK 1517
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1518 TNVETQFGPLTCMRLTGEPGTYDDN 1542
Score = 97.9 bits (233), Expect = 2e-19
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
QT S+I+ +H D TLL AS+ KRLRFRP+ PY+++PSD LG L+ S C+ Y+R
Sbjct: 1290 QTSSLISARHQPGSDSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLYRSWCQVYRRD 1349
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
PN ++PF LF+ECI +N+Y+QL ++
Sbjct: 1350 PNVRLPFNEALFLECIAVNDYAQLSSK 1376
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 136 bits (330), Expect = 4e-31
Identities = 56/85 (65%), Positives = 74/85 (87%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQA + AN +RSDPDWR+TAV+IF+K+QHK+N+ SIFG WKACQTLALMHD ++L
Sbjct: 1501 SSKTQATLVANHSRSDPDWRHTAVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSL 1560
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
GP+KKYQR+FD+ DRPP+L+ + G+
Sbjct: 1561 GPVKKYQRIFDALDRPPHLYTHCGK 1585
Score = 130 bits (315), Expect = 3e-29
Identities = 59/85 (69%), Positives = 71/85 (83%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
+P DLS + +HL QI + NDY+AFDQSQHGE+V+LE KM+RLSIPSHLI LH ++K
Sbjct: 1586 SPADLSAWCQTHLTG-QIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLIQLHVHLK 1644
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1645 TNVATQFGPLTCMRLTGEPGTYDDN 1669
Score = 97.9 bits (233), Expect = 2e-19
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q S+IA KH DPTLL SI KRLRFR S P+ LS D +LG LF +LC+AY+R+
Sbjct: 1417 QPSSLIAAKHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRN 1476
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
P H PF P LF ECI LN+Y+QL ++
Sbjct: 1477 PTHVGPFNPALFAECIALNDYAQLSSK 1503
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 136 bits (330), Expect = 4e-31
Identities = 58/85 (68%), Positives = 71/85 (83%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQA I AN RSDPDWR TAVRIF+K QHK+N+ SIF WKACQTLALMH I+L+
Sbjct: 1467 SSKTQATIVANHQRSDPDWRLTAVRIFAKAQHKVNDASIFSGWKACQTLALMHGYIILVL 1526
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
GP+KKYQR+FDSKDRPP+++ + G+
Sbjct: 1527 GPVKKYQRIFDSKDRPPHIYYHCGK 1551
Score = 119 bits (287), Expect = 7e-26
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP LS++ +HL ++ NDY+AFDQSQHGEAVVLE KM RLSIP LI LH ++K
Sbjct: 1552 TPSQLSQWCQTHLSGSS-YIANDYTAFDQSQHGEAVVLECLKMRRLSIPDSLIQLHSHLK 1610
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
++ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1611 CSVDTQFGPLTCMRLTGEPGTYDDN 1635
Score = 108 bits (259), Expect = 2e-22
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q S++AP H DPTLL SI KRLRFR S PY ++PSD++LG LFSSLC AY R+
Sbjct: 1383 QPSSLLAPIHKPASDPTLLPGSIKKRLRFRASSSPYSITPSDQLLGQHLFSSLCLAYGRN 1442
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
PN +PFQP+LF ECI +N+Y+QL ++
Sbjct: 1443 PNSVLPFQPELFSECICINDYAQLSSK 1469
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 134 bits (324), Expect = 2e-30
Identities = 56/85 (65%), Positives = 72/85 (84%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KT+A I ANA RSDPDWRYT+V+IF+K+QHK+N+GSIFG WKACQTLALMHD ++L
Sbjct: 1370 SSKTKATIVANAERSDPDWRYTSVKIFAKSQHKVNDGSIFGNWKACQTLALMHDYVILTL 1429
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
GP+KKYQR FD KD P +++ + G+
Sbjct: 1430 GPVKKYQRFFDQKDCPAHIYKHCGK 1454
Score = 123 bits (297), Expect = 4e-27
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP DLS + ++L Q+++ NDY++FDQSQHGEAVVLE KM+RL IP LI+LH ++K
Sbjct: 1455 TPADLSIWCKTNLSH-QVYIENDYTSFDQSQHGEAVVLEVLKMQRLQIPKELIELHVHLK 1513
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1514 TNVDTQFGPLTCMRLTGEPGTYDDN 1538
Score = 99 bits (238), Expect = 6e-20
Identities = 46/89 (51%), Positives = 58/89 (65%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q S+IA H D TLL S+ KRLRFRPS PY +P+D +LG LF SLC Y RH
Sbjct: 1286 QPSSLIAAIHKPATDSTLLPLSVNKRLRFRPSTSPYCFTPNDFILGEHLFQSLCSVYNRH 1345
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTRLK 269
P+ +PF P LF ECI +N+Y+QL ++ K
Sbjct: 1346 PSESIPFDPVLFAECICINDYAQLSSKTK 1374
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 134 bits (324), Expect = 2e-30
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
S+KTQA I +NA+RSDPDWRYT VRIF+K+QHK+N+GSIFG WKACQTLALMHD ++L
Sbjct: 1397 SSKTQATIVSNASRSDPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMHDFVILTL 1456
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
GP+KKYQR+ D DRP ++ + G+
Sbjct: 1457 GPVKKYQRIIDHYDRPNFIYTHCGK 1481
Score = 130 bits (315), Expect = 3e-29
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP +LS ++ S LK ++CNDY++FDQSQHGEAV+ E KM R+ IP HLIDLH Y+K
Sbjct: 1482 TPSELSAWSHSFLKG-DAYICNDYTSFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLK 1540
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1541 TNVSTQFGPLTCMRLTGEPGTYDDN 1565
Score = 95.5 bits (227), Expect = 1e-18
Identities = 44/87 (50%), Positives = 59/87 (67%)
Frame = +3
Query: 3 QTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRH 182
Q S++A H DPTLL SI+KRLRFR S PY +P+D +LG L+++ C+A+ R
Sbjct: 1313 QPSSLLAASHKPASDPTLLIFSISKRLRFRASSSPYAFTPNDLILGHLLYTNWCKAFGRC 1372
Query: 183 PNHKVPFQPDLFVECINLNEYSQLPTR 263
PN +PF P LF ECI LNEY+QL ++
Sbjct: 1373 PNSTIPFNPALFAECICLNEYAQLSSK 1399
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 121 bits (292), Expect = 2e-26
Identities = 56/85 (65%), Positives = 69/85 (81%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP++LS + +H+K Q H+ NDY+A+DQSQ GEAVVLER KM R+SIP LIDLH ++K
Sbjct: 56 TPFELSTWCQAHMKT-QHHLTNDYTAYDQSQGGEAVVLERLKMLRVSIPQPLIDLHVHLK 114
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN+ +Q GPLT MRLTGEPGTYDDN
Sbjct: 115 TNVDTQLGPLTSMRLTGEPGTYDDN 139
Score = 84.6 bits (200), Expect = 2e-15
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +2
Query: 344 QHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVY 499
QHK+NE SIF WKACQTLAL HDA++L+ GP+KKYQR FD+K RP ++ +
Sbjct: 1 QHKVNEASIFSDWKACQTLALAHDAVILLLGPVKKYQRCFDNKARPSKIYYH 52
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 66.1 bits (154), Expect = 9e-10
Identities = 39/101 (38%), Positives = 53/101 (52%)
Frame = +1
Query: 460 FRQ*RSSSELVCVWRPTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKME 639
FRQ E+ TP D+S +A ++ + + NDY+AFDQSQ G + E K +
Sbjct: 1204 FRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAK 1263
Query: 640 RLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 762
IP +I + IKTN G L+ MRLTGE T+D N
Sbjct: 1264 HHCIPEEIIQAYIDIKTNAHIFLGTLSIMRLTGEGPTFDAN 1304
Score = 34.7 bits (76), Expect = 2.6
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 293 RSDPDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIVLIFGPIKKYQRVFDS 469
R PD+ + +F K+Q + P K QT+A + V++FG + +Y R F
Sbjct: 1147 RQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQ 1206
Query: 470 KDRPPNLFV 496
+P +F+
Sbjct: 1207 AFQPKEVFI 1215
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 64.1 bits (149), Expect = 4e-09
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +1
Query: 508 TPYDLSRFASS---HLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHC 678
TP DLS +A+ H K + ND++AFDQSQ G + E K SIP ++D +
Sbjct: 1305 TPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIPEDILDAYL 1364
Query: 679 YIKTNITSQFGPLTCMRLTGEPGTYDDN 762
IKTN G L MRLTGE T+D N
Sbjct: 1365 TIKTNSKIFLGTLAIMRLTGEGPTFDAN 1392
Score = 34.7 bits (76), Expect = 2.6
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQ--HKINE-GSIFGPWKACQTLALMHDA 418
T +K + +I+ R PD+ + +F K+Q K+ + G+I K QT+A H A
Sbjct: 1217 TYLSKPENMIKNGMARQSPDYDPNVISLFLKSQWVKKMEKLGAI--KIKPGQTIASFHQA 1274
Query: 419 IVLIFGPIKKYQR 457
V++FG + +Y R
Sbjct: 1275 TVMLFGTMARYMR 1287
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/84 (38%), Positives = 44/84 (52%)
Frame = +1
Query: 502 RPTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCY 681
R T D +F ++H + DY+A+D SQ V E M RL P +I+ +
Sbjct: 1650 RRTNEDFEKFVAAHWDHTRESTDGDYTAYDASQDATFVNFETLLMRRLDFPLDIIEAYVE 1709
Query: 682 IKTNITSQFGPLTCMRLTGEPGTY 753
+K +ITS FGPL MR +GE TY
Sbjct: 1710 MKASITSHFGPLAIMRFSGEVWTY 1733
Score = 39.1 bits (87), Expect = 0.12
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++K A + NA RSDP W +++F K Q + A Q++A ++L +
Sbjct: 1567 TSKPLATLINNAERSDPSWSLNMIKLFIKGQTVKKLEKMGSDATAGQSIASFRAEVLLAW 1626
Query: 434 GPIKKYQRVFDSKDR---PPNLFVY 499
GP Y R D + R PP+++++
Sbjct: 1627 GP---YARYIDRRIRALLPPHVYIH 1648
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 61.3 bits (142), Expect = 3e-08
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP DL +F S + ND++AFDQSQ G + E K + +IP+ +I+ + YIK
Sbjct: 1356 TPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFNIPAEIIEGYIYIK 1415
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
N G L MRL+GE T+D N
Sbjct: 1416 LNAAIFLGTLGIMRLSGEGPTFDAN 1440
Score = 33.1 bits (72), Expect = 7.8
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 287 ANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKAC--QTLALMHDAIVLIFGPIKKYQRV 460
A+R PD+ + +F K+Q + + G K QT+A V+++G + +Y R
Sbjct: 1281 ASRQSPDFPKNKIALFLKSQW-VKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRK 1339
Query: 461 FDSKDRPPNLFV 496
+ +P N+F+
Sbjct: 1340 MRRRFQPDNIFI 1351
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/85 (38%), Positives = 45/85 (52%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP D+ R+A H ++ NDY+AFDQSQ G + E K IP I+ + +K
Sbjct: 1323 TPEDMDRWAREHWNFNRLSYANDYTAFDQSQDGAMLQFEVLKARHHCIPEEFIEGYIDLK 1382
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
+ + G L MRLTGE T+D N
Sbjct: 1383 CSSKTFLGILKIMRLTGEGPTFDAN 1407
Score = 40.3 bits (90), Expect = 0.051
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIV 424
T +K +IQ NR PD+ A+ +F K+Q + P KA QT+A V
Sbjct: 1235 TYLSKPINMIQNGQNRQSPDFDPKAISLFLKSQWVKKVEKLGQPRIKAGQTIASFQQEAV 1294
Query: 425 LIFGPIKKYQRVFDSKDRPPNLFV 496
+++G + +Y R +P N+F+
Sbjct: 1295 MLYGTMARYMRRVREVFQPANIFI 1318
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 60.5 bits (140), Expect = 4e-08
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP DL++F + + ND++AFDQSQ G + E K + +IP+ +I+ + YIK
Sbjct: 1316 TPEDLNKFVKTKWHFNRPAHTNDFTAFDQSQDGAMLQFEVMKAKFFNIPADIIEGYIYIK 1375
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
N G L MRL+GE T+D N
Sbjct: 1376 LNAVIFLGTLGIMRLSGEGPTFDAN 1400
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 59.3 bits (137), Expect = 1e-07
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = +1
Query: 460 FRQ*RSSSELVCVWRPTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKME 639
FR S + ++ TP DLSR+ ++ + ND++AFDQSQ G + E K +
Sbjct: 1132 FRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAK 1191
Query: 640 RLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 762
++P +I+ + IK + G L+ MRLTGE T+D N
Sbjct: 1192 YFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDAN 1232
Score = 35.5 bits (78), Expect = 1.5
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQH-KINEGSIFGPWKACQTLALMHDAIV 424
T KT A ++ R PD+ + IF K+Q K E K QT+A V
Sbjct: 1060 TYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAV 1119
Query: 425 LIFGPIKKYQRVFDSKDRPPNLFV 496
+++G + +Y R F P N+ +
Sbjct: 1120 MLYGTMARYMRRFRDALSPNNIMI 1143
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 58.0 bits (134), Expect = 2e-07
Identities = 33/85 (38%), Positives = 46/85 (54%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP DLSR+ +H + ND++AFDQSQ G + E K + ++P +I+ + IK
Sbjct: 1124 TPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIK 1183
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
G L MRLTGE T+D N
Sbjct: 1184 LTPQIFTGTLAIMRLTGEGPTFDAN 1208
Score = 35.9 bits (79), Expect = 1.1
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIV 424
T +K+ I+ R PD+ + IF K+Q + P K QT+A A V
Sbjct: 1036 TYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAV 1095
Query: 425 LIFGPIKKYQRVFDSKDRPPNLFVYGGQLHTISLGLLRPI*NHYKF 562
+++G + +Y R + P N+ + L R + NH+ F
Sbjct: 1096 MLYGTMARYMRRYRDALGPNNIMI---NCERTPADLSRWVRNHWDF 1138
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 58.0 bits (134), Expect = 2e-07
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP DL +A ++ + ND++AFDQSQ G + E K + +IPS +I+ + +K
Sbjct: 1088 TPADLDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVELK 1147
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN G L MRL+GE T+D N
Sbjct: 1148 TNAKVFLGVLKIMRLSGEGPTFDAN 1172
Score = 36.7 bits (81), Expect = 0.63
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 293 RSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSK 472
R DPD+ +++F K+Q + K QT+A A V+++G + +Y R
Sbjct: 1016 RQDPDFPINEIKLFLKSQWVKKVEKLGMVVKPGQTIASFAQAPVMLYGTMARYMRRMREV 1075
Query: 473 DRPPNLFV 496
+P N+F+
Sbjct: 1076 YQPSNIFI 1083
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/100 (32%), Positives = 50/100 (50%)
Frame = +1
Query: 463 RQ*RSSSELVCVWRPTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 642
RQ +E+ P D+++F + ND++AFDQSQ G + E K +
Sbjct: 1260 RQQHQPAEIFINCEKNPEDMTQFIKQGWNFKRQAYSNDFTAFDQSQDGAMLQFEVIKAKH 1319
Query: 643 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 762
+P+ +I+ + +IK N G L MRL+GE T+D N
Sbjct: 1320 YGVPADIIEGYLHIKMNAKIFLGTLAIMRLSGEGPTFDAN 1359
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/85 (36%), Positives = 44/85 (51%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP D ++F H Q+ ND++AFDQSQ + E K +IP +I+ + IK
Sbjct: 1149 TPEDFNKFILEHWSYKQVAHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIK 1208
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
G L+ MRL+GE T+D N
Sbjct: 1209 LTAEIFLGTLSIMRLSGEGPTFDAN 1233
>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
Potexvirus|Rep: Replication-associated protein -
Schlumbergera virus X
Length = 377
Score = 55.2 bits (127), Expect = 2e-06
Identities = 34/85 (40%), Positives = 44/85 (51%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP LS++A + + NDY+AFDQSQ G + E K SIP ID + +K
Sbjct: 145 TPEALSQWALENWNFNRTSYANDYTAFDQSQDGAMLQFEILKARHHSIPDVYIDGYVELK 204
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
+ G L MRLTGE T+D N
Sbjct: 205 CCSKTFLGVLKIMRLTGEGPTFDAN 229
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +1
Query: 523 SRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITS 702
S++ +H K ++ ND+ A+DQSQ G + E K +P+ LI+ + +K N
Sbjct: 1125 SKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKI 1184
Query: 703 QFGPLTCMRLTGEPGTYDDN 762
G L MRLTGE T+D N
Sbjct: 1185 FLGTLGIMRLTGEGPTFDAN 1204
Score = 36.7 bits (81), Expect = 0.63
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 293 RSDPDWRYTAVRIFSKTQH-KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDS 469
R PD+ + +F K+Q K NE KA QT+A + + V+IFG + +Y R
Sbjct: 1047 RQSPDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRRVRE 1106
Query: 470 KDRPPNLFV 496
K P N+ +
Sbjct: 1107 KFCPKNILI 1115
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 55.2 bits (127), Expect = 2e-06
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP +S F + ND++AFDQSQ G + E K + +IP +I + IK
Sbjct: 1257 TPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIK 1316
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
TN G L MRLTGE T+D N
Sbjct: 1317 TNAKIFLGTLAIMRLTGEGPTFDAN 1341
Score = 35.1 bits (77), Expect = 1.9
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPW-KACQTLALMHDAIV 424
T +K +I+ R PD+ A+ +F K+Q + P K QT+A H V
Sbjct: 1169 TYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITV 1228
Query: 425 LIFGPIKKYQRVFDSKDRPPNLFV 496
+++G + +Y R + P ++ +
Sbjct: 1229 MLYGTMARYMRRIRDRFCPKHILI 1252
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP + F + + + +DY+ +DQSQ + E +K +P ++D + +IK
Sbjct: 1240 TPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDAAFLNFELRKARHFGVPEEVVDFYAFIK 1299
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
T+ + G L MRL+GE T+D N
Sbjct: 1300 THAKTFLGNLAVMRLSGEGPTFDAN 1324
Score = 40.3 bits (90), Expect = 0.051
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVL 427
T +K A +Q A R DPD+ A+ +F+K+Q + +KA QT++ + VL
Sbjct: 1153 TYLSKPTANLQQGAKRQDPDFPENAIALFNKSQWVKKLEKVGCRFKAGQTISAFKQSTVL 1212
Query: 428 IFGPIKKYQRVFDSKDRPPNLFV 496
+ + Y R +P N+F+
Sbjct: 1213 LTTTMALYLRKKREGHQPDNVFI 1235
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/85 (36%), Positives = 46/85 (54%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
T DL++F + ND++AFDQSQ G + E K + +IP+ +I+ + IK
Sbjct: 1199 TTDDLNQFVKQGWNFNRTAQTNDFTAFDQSQDGAMLQFEVMKAKFFNIPADIIEGYINIK 1258
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
N G L+ MRL+GE T+D N
Sbjct: 1259 LNAKIFLGTLSIMRLSGEGPTFDAN 1283
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 53.6 bits (123), Expect = 5e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + + E M R+++P ID + ++K N+ S+ G + MR TGE T
Sbjct: 1548 SDYEAFDASQDSQILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEAAT 1607
Query: 751 Y 753
+
Sbjct: 1608 F 1608
Score = 46.4 bits (105), Expect = 8e-04
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +2
Query: 260 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 439
K++A I+ +A RS+ +W+ IF K+Q F KA QTLA ++ F P
Sbjct: 1445 KSKATIENHAQRSNREWKIDEAMIFMKSQLCTKFEKRFVEAKAGQTLACFSHIVLCRFAP 1504
Query: 440 IKKYQRVFDSKDRPPNLFVYGGQ 508
+Y +++ P N +++ G+
Sbjct: 1505 YVRYMEKIVNENLPKNFYIHNGK 1527
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 53.6 bits (123), Expect = 5e-06
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP D + F + ND++AFDQSQ G + E K + +IP +I+ + IK
Sbjct: 1055 TPADFNSFILDEWNFNRTCFSNDFTAFDQSQDGSILQFEVIKAKFHNIPEDVIEGYIQIK 1114
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
T+ G L+ MRL+GE T+D N
Sbjct: 1115 THAKIFLGTLSIMRLSGEGPTFDAN 1139
Score = 38.7 bits (86), Expect = 0.16
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQH-KINEGSIFGPWKACQTLALMHDAIV 424
T K+ A + A R PD+ A+ +F K+Q K E KA QT+A V
Sbjct: 967 TYLKKSAAALVNAATRQSPDFDSHAIALFLKSQWVKKTEKIGCLKIKAGQTIAAFMQQTV 1026
Query: 425 LIFGPIKKYQRVFDSKDRPPNLFV 496
+I+G + +Y R F ++ P +FV
Sbjct: 1027 MIYGTMARYMRKFRNQYCPRKIFV 1050
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 53.2 bits (122), Expect = 7e-06
Identities = 27/61 (44%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E K ME L IP LI + YIKT++ S+ G MR +GE T
Sbjct: 1760 SDYEAFDASQDQYIMAFELKVMEYLGIPKDLIADYVYIKTHLGSKLGNFAIMRYSGEAST 1819
Query: 751 Y 753
+
Sbjct: 1820 F 1820
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +2
Query: 257 NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFG 436
+K+ A+I +A RS DW +F K+QH + F KA Q++ A++ F
Sbjct: 1656 SKSAAIIANHAGRSCRDWLADVGLVFMKSQHCTKFDNRFRDAKAAQSIVCFQHAVLCRFA 1715
Query: 437 PIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + + P N +V+ G+
Sbjct: 1716 PYMRYIEMKLQEVLPSNFYVHSGK 1739
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 52.0 bits (119), Expect = 2e-05
Identities = 27/66 (40%), Positives = 38/66 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E ME L +P LI+ + YIKT++ S+ G + MR +GE T
Sbjct: 1876 SDYEAFDASQDAYILAFEICLMEHLCLPRDLIEDYKYIKTHLGSKLGNFSIMRFSGEAST 1935
Query: 751 YDDNRI 768
+ N I
Sbjct: 1936 FLFNTI 1941
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/83 (26%), Positives = 43/83 (51%)
Frame = +2
Query: 260 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 439
K+ A I+ ++ RS+ DW+ +F K+Q+ + F KA QT+ H ++ F P
Sbjct: 1773 KSTATIENHSGRSNLDWKIDTGLVFMKSQNCTKFENRFRDAKAAQTIVCFHHIVLARFAP 1832
Query: 440 IKKYQRVFDSKDRPPNLFVYGGQ 508
+Y + ++ P N +++ G+
Sbjct: 1833 FIRYIEMKVNEALPKNYYIHSGK 1855
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ V E ME L +P LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1792 SDYEAFDASQDQYIVGFELAVMEYLGLPRDLINDYIYIKTHLGSKLGSFAIMRFSGEAST 1851
Query: 751 Y 753
+
Sbjct: 1852 F 1852
Score = 41.5 bits (93), Expect = 0.022
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = +2
Query: 245 LTASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIV 424
L ++K+ A I+ +ANRS DW IFSK+Q + F KA Q++ ++
Sbjct: 1684 LKKTSKSAATIENHANRSCRDWLIDVGLIFSKSQLCTKFDNRFRDAKAAQSIVCFQHEVL 1743
Query: 425 LIFGPIKKYQRVFDSKDRPPNLFVYGGQ 508
F P +Y + ++ P +++ G+
Sbjct: 1744 CRFAPYIRYIEMKLNEVLPDRFYIHSGK 1771
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP + F + + + +DY+ +DQSQ + E +K L +P ++ + +IK
Sbjct: 1315 TPDQFNNFVLTKWDFSRPNYTSDYTQYDQSQDAPFLNFELRKARHLGVPDEVLSFYKFIK 1374
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
T+ + G L MRL+GE T+D N
Sbjct: 1375 THAKTFVGNLAIMRLSGEGPTFDAN 1399
Score = 44.0 bits (99), Expect = 0.004
Identities = 24/83 (28%), Positives = 43/83 (51%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVL 427
T +K A +Q A+R DPD+ A+ +F+K+Q + +KA QT++ +VL
Sbjct: 1228 TYLSKPAANLQQGASRQDPDFPDNAIALFNKSQWVKKLEKVGAKFKAGQTISAFKQQVVL 1287
Query: 428 IFGPIKKYQRVFDSKDRPPNLFV 496
+ + Y R + +P N+F+
Sbjct: 1288 LTTTMALYLRKKREQHQPDNVFI 1310
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF--GPLTCMRLTGEP 744
ND AFD SQ G V ER E L +P LID Y+ T I S G ++ MRL+GE
Sbjct: 1374 NDCEAFDASQDGAFVEFERLHAEFLGVPRELIDF--YVDTKIKSYIWRGTISVMRLSGEG 1431
Query: 745 GTYDDN 762
TYD N
Sbjct: 1432 PTYDFN 1437
Score = 38.7 bits (86), Expect = 0.16
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFG-PWKACQTLALMHDAIV 424
T +KT+A+++ R PD+ + F KTQ + + +G P KA QT+ V
Sbjct: 1265 TYLSKTEALLKGGQLRQSPDFDKFKIADFLKTQW-VRKTEKYGLPIKAGQTVTSFMQETV 1323
Query: 425 LIFGPIKKY-QRVFDSKDRPPNLFVY 499
+ G + +Y +R+FD PN++++
Sbjct: 1324 MATGTLSRYMRRMFDKLCTNPNVYLH 1349
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 50.8 bits (116), Expect = 4e-05
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 517 DLSRFASSHLKPLQIH-VCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTN 693
DL ++A H+ + NDY+A+D+S GE + E M +IP +I+LH +
Sbjct: 1309 DLGQWAREHVPSKRTKSFTNDYTAYDKSCRGETLAFEICIMRLFNIPEWIIELHVELTLC 1368
Query: 694 ITSQFGPLTCMRLTGEPGTY 753
+TS G L MR +G+ TY
Sbjct: 1369 VTSALGKLGIMRTSGQWCTY 1388
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 50.8 bits (116), Expect = 4e-05
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E M+ L +P+ LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1779 SDYEAFDASQDQYIMAFELAVMKHLRLPADLIEDYKYIKTHLGSKLGSFAIMRFSGEAST 1838
Query: 751 Y 753
+
Sbjct: 1839 F 1839
Score = 44.8 bits (101), Expect = 0.002
Identities = 31/111 (27%), Positives = 51/111 (45%)
Frame = +2
Query: 245 LTASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIV 424
L ++K+ A I+ +A RS DW +F K+Q + F KA Q++ A++
Sbjct: 1671 LKKTSKSAATIENHAQRSCRDWLADVGLVFMKSQLCTKWDNRFRNAKAAQSIVCFQHAVL 1730
Query: 425 LIFGPIKKYQRVFDSKDRPPNLFVYGGQLHTISLGLLRPI*NHYKFMSAMT 577
F P +Y + ++ PPN +++ G+ SL L YKF T
Sbjct: 1731 CRFAPYMRYIEMKLNEVLPPNFYIHSGK----SLEELDAWVKRYKFSGVCT 1777
>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
Carlavirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Potato virus S (strain Peruvian)
Length = 353
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ V E M L +P+ LI+ + YIKT++ S+ G MR +GE T
Sbjct: 142 SDYEAFDASQDQYIVAFELALMRYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEAST 201
Query: 751 Y 753
+
Sbjct: 202 F 202
Score = 40.3 bits (90), Expect = 0.051
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
+ K+ A I+ ++NRS DW +FSK+Q + F KA QT+ +++ F
Sbjct: 37 TQKSAATIENHSNRSCRDWLADMGMVFSKSQLCTKFDNRFRDAKAAQTIVCFQHSVLCRF 96
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y ++ P +++ G+
Sbjct: 97 APYMRYIEKKLNEVLPATFYIHSGK 121
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 50.4 bits (115), Expect = 5e-05
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E M L++P LI+ + ++K N S+ G MR TGE GT
Sbjct: 1816 SDYEAFDSSQDANILAFEVSLMNYLNLPRDLIEDYKHLKFNTHSKLGRFAVMRFTGEAGT 1875
Query: 751 Y 753
+
Sbjct: 1876 F 1876
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +2
Query: 260 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 439
K+ A ++ ++ RSDPDW IF K+Q + + KA QTLA H ++ P
Sbjct: 1713 KSMATLENHSGRSDPDWEVEKALIFMKSQLCTKFDNRYRDAKAGQTLACFHHNVLCRLAP 1772
Query: 440 IKKYQRVFDSKDRPPNLFVYGGQ 508
+Y K P NL+++ G+
Sbjct: 1773 YVRYIEKKVFKALPRNLYIHSGK 1795
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E M+ L +P+ LI+ + YIK ++ S+ G MR TGE T
Sbjct: 1721 SDYEAFDASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEAST 1780
Query: 751 Y 753
+
Sbjct: 1781 F 1781
Score = 40.3 bits (90), Expect = 0.051
Identities = 25/85 (29%), Positives = 37/85 (43%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++K A I + RS W IF K+Q S+F KA QTLA H ++ F
Sbjct: 1616 TSKDSATIANHCIRSQNSWPIDIADIFMKSQLCTKMESMFCEAKAGQTLACFHHVVLARF 1675
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y P N +++ G+
Sbjct: 1676 SPWVRYIEKKLVSSLPDNYYIHSGK 1700
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ V E ME L +P LI+ + +IKT++ S+ G MR +GE T
Sbjct: 1776 SDYEAFDASQDQYMVAFEVAVMEYLGLPRDLIEDYKFIKTHLGSKLGNFAIMRFSGEAST 1835
Query: 751 Y 753
+
Sbjct: 1836 F 1836
Score = 35.1 bits (77), Expect = 1.9
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++K+ A I+ ++ RS DW IFSK+Q + F KA Q++ ++ F
Sbjct: 1671 TSKSAATIENHSGRSCRDWLIDIGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHEVLCRF 1730
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + P +V+ G+
Sbjct: 1731 APYMRYIEKKLHEVLPERYYVHSGK 1755
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
ND++A+DQSQ G + E K IP +++ + +K N G L MRLTGE T
Sbjct: 1107 NDFTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGEGPT 1166
Query: 751 YDDN 762
+D N
Sbjct: 1167 FDAN 1170
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 49.6 bits (113), Expect = 8e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +1
Query: 517 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 696
DL+ + ++H K + +DY AFD SQ + E + M+ L +P LI + +IKT++
Sbjct: 1951 DLAEWVTAH-KFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHL 2009
Query: 697 TSQFGPLTCMRLTGEPGTY 753
S+ G MR TGE T+
Sbjct: 2010 GSKLGNFAIMRFTGEASTF 2028
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 257 NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFG 436
+K+ A I+ ++ RS DW IF K+Q + F KA QTLA A++ F
Sbjct: 1864 SKSMATIENHSGRSCEDWPIDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHAVLCRFA 1923
Query: 437 PIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + P NL+++ G+
Sbjct: 1924 PYMRYIEAKVFEVLPKNLYIHSGK 1947
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 49.6 bits (113), Expect = 8e-05
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E ME L +P LI+ + YIKT++ + G L MR +GE T
Sbjct: 1710 SDYEAFDASQDQYIMAFEIALMEFLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEAST 1769
Query: 751 Y 753
+
Sbjct: 1770 F 1770
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 257 NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFG 436
+K+ A+I+ +ANRS DW +FSK+Q + F KA QT+ ++++ F
Sbjct: 1606 SKSAAIIENHANRSCSDWLADVGLVFSKSQICSKWDNRFRSAKAAQTIVCFQHSVLVRFA 1665
Query: 437 PIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + P +++ G+
Sbjct: 1666 PYMRYIEKKVLEVLPKQYYIHSGK 1689
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 49.6 bits (113), Expect = 8e-05
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E + M+ L +PS LI+ + +IKT++ S+ G MR +GE T
Sbjct: 1754 SDYEAFDASQDEFIMAFELELMKYLRLPSDLIEDYKFIKTSLGSKLGNFAIMRFSGEAST 1813
Query: 751 Y 753
+
Sbjct: 1814 F 1814
Score = 42.7 bits (96), Expect = 0.010
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 257 NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFG 436
+K+ A I+ ++ RS DW +IFSK+Q + F KA Q++ A++ F
Sbjct: 1650 SKSAATIENHSGRSCRDWPTDVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFA 1709
Query: 437 PIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + + P N +++ G+
Sbjct: 1710 PYMRYIEMKVHEVLPKNYYIHSGK 1733
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E + M L +P LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1752 SDYEAFDASQDEYIMAFELELMNFLGLPHDLIEDYKYIKTSLGSKLGNFAIMRFSGEAST 1811
Query: 751 Y 753
+
Sbjct: 1812 F 1812
Score = 43.6 bits (98), Expect = 0.006
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 257 NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFG 436
+K+ A I+ ++ RS DW +IFSK+Q + F KA Q++ A++ F
Sbjct: 1648 SKSAATIENHSGRSCRDWPIEVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFA 1707
Query: 437 PIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + + P N +++ G+
Sbjct: 1708 PYMRYIEMKVQEVLPRNFYIHSGK 1731
>UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)
[Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
Helicase (EC 3.6.1.-)]; n=17; Chrysanthemum virus B|Rep:
RNA replication protein (ORF 1 protein) [Includes:
RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC
3.6.1.-)] - Chrysanthemum virus B (CVB)
Length = 260
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ V E ME L +P LI+ + +IK ++ S+ G MR +GE T
Sbjct: 45 SDYEAFDASQDQYIVAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEAST 104
Query: 751 Y 753
+
Sbjct: 105 F 105
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ V E M L +P L+ + YIKT++ S+ G MR +GE T
Sbjct: 1757 SDYEAFDASQDQYIVAFEVAVMNYLGLPRDLVRDYLYIKTHLGSKLGNFAIMRFSGEAST 1816
Query: 751 Y 753
+
Sbjct: 1817 F 1817
Score = 42.7 bits (96), Expect = 0.010
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++K+ A I+ ++ RS DW +IFSK+QH + F KA Q++ ++ F
Sbjct: 1652 TSKSAATIENHSGRSCRDWLIDTAQIFSKSQHCTKFDNRFRVAKAAQSIVCFQHEVLCRF 1711
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + P +++ G+
Sbjct: 1712 APYMRYIEKKLHQALPDKFYIHSGK 1736
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/85 (29%), Positives = 43/85 (50%)
Frame = +1
Query: 508 TPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 687
TP + F + + + +DY+ +DQSQ + E +K L +P ++ + +IK
Sbjct: 1397 TPEQFNAFVMTKWDFDRPNYTSDYTQYDQSQDAAFLNFEIRKARHLGVPEDVLSFYKFIK 1456
Query: 688 TNITSQFGPLTCMRLTGEPGTYDDN 762
T+ + G L MRL+ E T+D N
Sbjct: 1457 THAKTFLGNLAIMRLSAEGPTFDAN 1481
Score = 37.5 bits (83), Expect = 0.36
Identities = 23/83 (27%), Positives = 42/83 (50%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVL 427
T +K + +Q A R DPD+ A+ +F+K+Q + +KA QT++ +VL
Sbjct: 1311 TYLSKPTSNLQQGA-RQDPDFPDNAIALFNKSQWVKKLEKVGARFKAGQTISAFKQEVVL 1369
Query: 428 IFGPIKKYQRVFDSKDRPPNLFV 496
+ + Y R + +P N+F+
Sbjct: 1370 LTTTMALYLRKKREQHQPDNVFI 1392
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E M+ L +P L++ + +IKT++ S+ G MR +GE T
Sbjct: 1660 SDYEAFDASQDHYIMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEAST 1719
Query: 751 Y 753
+
Sbjct: 1720 F 1720
Score = 33.9 bits (74), Expect = 4.5
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++K+ AVI+ ++ RS DW +F K Q F KA QT+ ++ F
Sbjct: 1555 TSKSAAVIENHSGRSCRDWLIDLGFLFIKNQLCTKFEKRFADAKAAQTILCFQHEVLCRF 1614
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + P +++ G+
Sbjct: 1615 APYVRYIEKKLNDALPAKYYIHSGK 1639
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 46.4 bits (105), Expect = 8e-04
Identities = 26/85 (30%), Positives = 42/85 (49%)
Frame = +2
Query: 254 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 433
++K+ A I+ +A RS DW IF K+QH + KA QTLA A+++ F
Sbjct: 1844 ASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRF 1903
Query: 434 GPIKKYQRVFDSKDRPPNLFVYGGQ 508
P +Y + PN +++ G+
Sbjct: 1904 APYMRYIEKKLMQALKPNFYIHSGK 1928
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD SQ + E + M+ L +P LI + +IK ++ S+ G + MR TGE T
Sbjct: 1949 SDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEAST 2008
Query: 751 Y 753
+
Sbjct: 2009 F 2009
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
ND+ AFDQSQ + E K + SIP +I + ++K + G + MRL+GE T
Sbjct: 1442 NDFEAFDQSQDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSGEGPT 1501
Query: 751 YDDN 762
+D N
Sbjct: 1502 FDAN 1505
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 260 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 439
K++ + ++ RSD DW+ V +F K+Q+ EG +F KA QTLA ++ FGP
Sbjct: 1258 KSEKMWANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGP 1317
Query: 440 I 442
+
Sbjct: 1318 M 1318
Score = 33.5 bits (73), Expect = 5.9
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY+AFD SQ + E ++ L + + +K + + G L MR TGE T
Sbjct: 1363 SDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCT 1422
Query: 751 Y 753
+
Sbjct: 1423 F 1423
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY+ +D+SQ G + E +K +P ++D + IKT+ L MRL+GE T
Sbjct: 1148 SDYTQYDKSQDGLFLNFELRKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSGEGPT 1207
Query: 751 YDDN 762
+D N
Sbjct: 1208 FDAN 1211
Score = 43.2 bits (97), Expect = 0.007
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVL 427
T +KT A I ANR DPD+ V +F K+Q + +KA QT++ +VL
Sbjct: 1041 TYLSKTAAQILNGANRQDPDFPDNFVALFLKSQWVKKLEKVGMQFKAGQTISSFKQQVVL 1100
Query: 428 IFGPIKKYQRVFDSKDRPPNLFV 496
+ + Y R + +P N+F+
Sbjct: 1101 LTTTLALYLRACRNSHQPDNVFI 1123
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 43.2 bits (97), Expect = 0.007
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +2
Query: 257 NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFG 436
+K A+I A+ +RS DW + +F K+Q + +F KA QTLA I+ F
Sbjct: 1318 SKNAAMIGAHHDRSTTDWPTNEIFLFIKSQLCTKKEKMFCDAKAGQTLACFSHLILCKFA 1377
Query: 437 PIKKYQRVFDSKDRPPNLFVY 499
P+ +Y ++ P N +++
Sbjct: 1378 PLNRYIEKKVTQSLPGNFYIH 1398
Score = 41.9 bits (94), Expect = 0.017
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY A+D SQ + E K + L+ + LI+ + Y+K ++ + G L +R TGE T
Sbjct: 1422 SDYKAYDASQDSCTLAFEYKLLRYLAFSNSLIEDYLYLKMHLNCKLGNLAIIRFTGEFCT 1481
Query: 751 Y 753
+
Sbjct: 1482 F 1482
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 43.2 bits (97), Expect = 0.007
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 248 TASNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVL 427
T +K+ A I A++ RSD DW + +F K+Q F KA QTLA I++
Sbjct: 1532 TKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFPHKILV 1591
Query: 428 IFGPIKKYQRVFDSKDRPPNLFVY 499
F P +Y + + P N +++
Sbjct: 1592 EFSPWCRYTEKVLTANLPDNYYIH 1615
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 41.9 bits (94), Expect = 0.017
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +2
Query: 260 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 439
K+ +I+ +A RSDPDW ++IF K Q KA QT+A +++ FGP
Sbjct: 1371 KSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFGP 1430
Query: 440 IKKYQRVFDSKDRPPNLFVY 499
I + + P N+ +Y
Sbjct: 1431 ILRQTERALRELLPENVMIY 1450
Score = 39.9 bits (89), Expect = 0.068
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +1
Query: 484 ELVCVWRPTPY-DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSH 660
E V ++ Y DL ++A + ++ + + +DY AFD+SQ + + LE + + P
Sbjct: 1445 ENVMIYSQKNYMDLDKWAKTWVESM-MGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPED 1503
Query: 661 LIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNRI 768
LI + +K + G L MR +GE GT+ N I
Sbjct: 1504 LIREYEELKLMMGCALGDLAVMRFSGEFGTFFFNTI 1539
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 39.9 bits (89), Expect = 0.068
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD+SQ + + E + ++ P LI+ + +K + G L MR +GE GT
Sbjct: 264 SDYEAFDRSQDEKILSFEVEVLKFFLWPEELINEYVTLKLMMGCSMGDLAIMRFSGEFGT 323
Query: 751 YDDNRI 768
+ N I
Sbjct: 324 FFFNTI 329
Score = 37.9 bits (84), Expect = 0.27
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = +2
Query: 260 KTQAVIQANANRSDPDWRYTAVRIFSKTQ--HKINEGSIFGPWKACQTLALMHDAIVLIF 433
K++ +I+ ++ RSDPDW ++IF K Q K+ + + KA QT+A A++ F
Sbjct: 161 KSRNLIEKHSYRSDPDWPSNYLKIFLKQQVCTKMEKRGVDA--KAGQTIACFSHAVLCRF 218
Query: 434 GP-IKKYQRVFDSKDRPPNLFVYGGQLHT 517
GP +++ ++ ++ N+ +Y + +T
Sbjct: 219 GPQLRRTEKALRAQ-LGDNVMIYSQKNYT 246
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|Rep:
Replicase - White ash mosaic virus
Length = 954
Score = 39.1 bits (87), Expect = 0.12
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +2
Query: 260 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 439
KT A + A R DPD+ + +F+K+Q + +KA QT++ +VL+F
Sbjct: 812 KTLAQLTNGAPRQDPDFPDNFIALFNKSQWVKKLDKVGAKFKAGQTISSFKQEVVLLFIT 871
Query: 440 IKKYQRVFDSKDRPPNLFV 496
+ Y R K +P +F+
Sbjct: 872 MALYLRKQRVKHQPDYVFI 890
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 38.7 bits (86), Expect = 0.16
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +1
Query: 571 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 750
+DY AFD+SQ + LE + ++ LID + +K + + G + MR TGE GT
Sbjct: 9 SDYEAFDRSQDAIILGLEIECLKLFGWDQDLIDDYRKLKLWMGCRLGAIAIMRFTGEFGT 68
Query: 751 YDDNRI 768
+ N I
Sbjct: 69 FFFNTI 74
>UniRef50_A0S6X5 Cluster: Microtubule-associated protein; n=2;
Nicotiana|Rep: Microtubule-associated protein -
Nicotiana benthamiana
Length = 338
Score = 33.9 bits (74), Expect = 4.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 643 AAPFSSVPKQRPHHAEIGQTQNSHCRHEFVMVSDGTKQTERDRMELASIHKQV 485
AA ++ K R + +G Q+ C F M+S + E+DR EL ++ +QV
Sbjct: 107 AAQSTATKKHRGQNKNVGSNQDG-CTENFSMISSRSPLLEKDREELMALREQV 158
>UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 548
Score = 33.9 bits (74), Expect = 4.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 664 IDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNR 765
+DLHC+IK + FGP+ + L G YD+N+
Sbjct: 279 VDLHCFIKKFVN--FGPIESVYLINSNGIYDNNK 310
>UniRef50_UPI00015A5797 Cluster: UPI00015A5797 related cluster; n=1;
Danio rerio|Rep: UPI00015A5797 UniRef100 entry - Danio
rerio
Length = 1772
Score = 33.1 bits (72), Expect = 7.8
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +1
Query: 49 RLYFRPPLPKDSVSDPPSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNV 228
RL+ L +S+SD PS F L+ C ++ I + + + L P+ +N+
Sbjct: 456 RLFLSITLVSNSISDNPSTELSFCPSIHLLSCLCPSIHCLSIC-LSVHQSLHPPSVPINL 514
Query: 229 SISMSTHSFQQDSSCHPS 282
SIS+S H HPS
Sbjct: 515 SISLSLHPVSIHPFIHPS 532
>UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep:
T7N9.5 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1436
Score = 33.1 bits (72), Expect = 7.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 589 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP 714
D+S V E K + +PSHL D HCY T T++ P
Sbjct: 883 DESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSP 924
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,619,474
Number of Sequences: 1657284
Number of extensions: 18052820
Number of successful extensions: 50329
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 48282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50307
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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