Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021051
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    29   0.97 
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    29   0.97 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   3.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   3.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.0  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   9.0  

>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 505 PTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLH 675
           P  +D  +  SS+   + IH  N++     S+H E   L   K   +S+P   ++LH
Sbjct: 192 PEKWDTKKVKSSNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLH 248


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 172 INDIPIIKFLFSPTFSLNVSISMSTHS 252
           IND+ ++K L  P F+LNV     T S
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLS 150


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 610 PHHAEIGQTQNSHCRHEFVMVSDGTKQTERDRMELASIHKQVRRTIFTVENSL 452
           P+H ++GQ   S    E   +    +Q E+ + EL      +   +F VEN +
Sbjct: 446 PYHLQVGQAWTSESERE---LEKKKEQVEKKQEELMQTRIVLEEQVFLVENMI 495


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 165  DIEMKTEMCQGLRQKEKVCKEGRRVGNGVFWQWRPKVK 52
            ++E +    QG  Q+ K  KEG  +   +  QWR  VK
Sbjct: 905  ELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 85  VSDPPSFLTDFLLLTKSLAHFCFHL 159
           + D P+ L  F LL+K ++HF F L
Sbjct: 309 IVDQPANLLKFSLLSKKVSHFLFTL 333


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -3

Query: 661 DEMEWKAAPFSSVPK---QRPHHAEI---GQTQNSHCRHEFVMVSDGTKQTERDRMELAS 500
           DE+++    ++S P    + P   E+   GQ  + HCRH+ +  +D T   E+      S
Sbjct: 188 DEIDYLVECYTSEPSLKSREPTDVELFMFGQVNSEHCRHK-IFNADWTIDGEKKDY---S 243

Query: 499 IHKQVRRT 476
           + K +R T
Sbjct: 244 LFKMIRNT 251


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 111 RLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 218
           RL   D  +     S +C   +R P + + F PDLF
Sbjct: 180 RLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,700
Number of Sequences: 5004
Number of extensions: 77357
Number of successful extensions: 260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)