Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021051
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558...    31   1.0  
12_02_1252 - 27346314-27347327                                         29   3.1  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    29   5.4  
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666...    29   5.4  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    28   7.1  
09_02_0411 + 8721855-8722232                                           28   9.4  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    28   9.4  

>02_01_0753 -
           5586705-5586766,5587864-5588056,5588154-5588423,
           5588522-5588687,5589049-5589209,5590065-5590181,
           5590269-5590549,5590750-5590833,5591100-5592542,
           5593167-5593575
          Length = 1061

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = -2

Query: 407 SRLMSGMLSKGRKLSLR*FYAEFLKICGQ--QCTASRDPN-----DLRSLG*QLESCWKL 249
           S ++ GM+  G K  LR  YA+F ++  Q  +  A  D N      L SL  Q ES WKL
Sbjct: 482 STMLKGMIESGTKQGLREGYAQFTEVLSQKTKVIAPDDSNLSKDEILSSLQTQEESIWKL 541


>12_02_1252 - 27346314-27347327
          Length = 337

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 670 GL*DEMEWKAAPFSSVPKQRPHHAEIGQTQNSHCRHEFVMVSDGTK 533
           GL DEM W   P+S+  +    HA +     +H  + +    DG K
Sbjct: 261 GLADEMTWPQPPYSAFREDSFGHAVLDIKNRTHAYYAWYRNDDGAK 306


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 684 DVAMEVYKMRWNGK 643
           D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702


>02_02_0089 -
           6668179-6668316,6668386-6668565,6668648-6668729,
           6669317-6669405,6669503-6669580,6670502-6670559,
           6670727-6670956,6671174-6671318,6671417-6671458,
           6671681-6671853
          Length = 404

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +1

Query: 133 SLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFQQDSSCHPSERKSFGSRLA 312
           S A++   LY  P+N++P+  F  S   +++   + S      D    PS     G  L 
Sbjct: 284 STAYYRMDLYERPLNEVPVTNFFGSVMNTIHTDSAYSGFLAADDIGTIPST----GDNLL 339

Query: 313 VHCCPHIFKNSA*NQRRLNFRPLE 384
            H    + +N A +QRR N   ++
Sbjct: 340 NHA---VLQNKA-SQRRSNIEEVK 359


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 144 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQL 254
           F    + R Y R+  ++ PF PD+ V+ I+L + S L
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASML 227


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 122 RRKSVRKEGGSETESFGNGGRK 57
           R+K  R++GG   ES G GGR+
Sbjct: 75  RKKGEREKGGRRRESTGGGGRR 96


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 114 VCKEGRRVGNGVFWQWRPKVKSGHISSHVWVL 19
           V  EG   G G  W WR KVK   ++   WVL
Sbjct: 18  VAVEGDEAGKGRRW-WRVKVKLSTVAVVAWVL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,083,047
Number of Sequences: 37544
Number of extensions: 527071
Number of successful extensions: 1546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)