Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021051
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.34 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 550 VSDGTKQTERDRMELASIHKQVRRTIFTVENSLIFLDRAKNQDNGIMHQ 404
           +SD     E ++  L+ +  Q  + I T+EN L  +DR  ++ N +  Q
Sbjct: 344 LSDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQ 392


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLGSRSRSFQRTSSCH 231


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 59  K*SRVIFRVMFGCYN 15
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 59  K*SRVIFRVMFGCYN 15
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +2

Query: 317 TAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQ 454
           T++    K Q+     S+   W A   ++L++  +++IF P   Y+
Sbjct: 378 TSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLIIFIPRNIYE 423


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLRSRSRSFQRTSSCH 231


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLRSRSRSFQRTSSCH 231


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLRSRSRSFQRTSSCH 231


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLRSRSRSFQRTSSCH 231


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLRSRSRSFQRTSSCH 231


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLRSRSRSFQRTSSCH 231


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 SISMSTHSFQQDSSCH 276
           S+   + SFQ+ SSCH
Sbjct: 216 SLRSRSRSFQRTSSCH 231


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 705 LTCNVGFDVAMEVYKMRWNGKPLHFLPFQNNGLTMLRLVKRRIVIADMNL 556
           +T NV  +     YK++WN       P +  G+ ML +    I + D+ L
Sbjct: 80  MTTNVWVEQRWNDYKLKWN-------PEEYGGVEMLYVPSENIWLPDIVL 122


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 59  K*SRVIFRVMFGCYN 15
           K SR++F V F C+N
Sbjct: 344 KYSRIVFPVCFVCFN 358


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 726 HAGQRSKLTCNV 691
           H G+R+ LTC+V
Sbjct: 623 HLGERTTLTCSV 634


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 645 FHSISSYRPPLLHQNQHYKS 704
           + S + + PP  H +QH+ S
Sbjct: 305 YPSTAGFLPPSYHPHQHHPS 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,434
Number of Sequences: 438
Number of extensions: 5625
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)