Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021051
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    31   0.64 
At1g04700.1 68414.m00467 protein kinase family protein low simil...    31   0.64 
At5g01940.1 68418.m00113 eukaryotic translation initiation facto...    31   0.85 
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    30   1.5  
At1g66235.1 68414.m07518 expressed protein ; expression supporte...    29   3.4  
At4g12940.1 68417.m02023 expressed protein hypothetical protein ...    29   4.5  
At3g06180.1 68416.m00710 expressed protein                             29   4.5  
At1g08470.1 68414.m00938 strictosidine synthase family protein s...    28   6.0  
At1g04590.2 68414.m00453 expressed protein isoform contains GG a...    28   6.0  
At1g04590.1 68414.m00452 expressed protein isoform contains GG a...    28   6.0  
At5g08540.1 68418.m01016 expressed protein similar to unknown pr...    28   7.9  
At4g27010.1 68417.m03885 expressed protein  ; expression support...    28   7.9  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   7.9  
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    28   7.9  
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS...    28   7.9  

>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 25/77 (32%), Positives = 34/77 (44%)
 Frame = +1

Query: 79  DSVSDPPSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHSFQ 258
           +S + PPS  +     + S  H C H     ++ + +I  LFS TF L+   S   HS  
Sbjct: 20  NSTTMPPSSRSAANQNSSSSLHLCKHSPSATLDLLILILVLFSGTFLLSSYFSYLIHSLS 79

Query: 259 QDSSCHPSERKSFGSRL 309
             SS  PS   S  S L
Sbjct: 80  LLSSHFPSITISLSSLL 96


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 202 FSPTFSLNVSISMSTHSFQQDSSCHPSERKSFGSRLAVHCCP 327
           FSPTF L  S + S H+++   S  P+  K +G+  AVH  P
Sbjct: 289 FSPTFHLRDSPT-SVHTWEHKDSNSPTFMKPYGNTNAVHFMP 329


>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 231

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 84  RFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLPTR 263
           R R   +P +L     +     F+ LCR   R P+H + F        ++LN+  +L  +
Sbjct: 97  RPRTVMMPPQLLAEGTITVCLNFADLCRTMHRKPDHVMKFLLAQMETKVSLNKQQRLEIK 156

Query: 264 LKLSSKRTQIV 296
             +SSK  Q V
Sbjct: 157 GLVSSKDFQAV 167


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
            PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 313  PPVGIRTICV--RLDDSLSLVGSCEYSLRL 230
            P  GI  +C+   LDDSL LV SC+ S+R+
Sbjct: 1071 PDKGISKLCLINELDDSLLLVASCDGSVRI 1100


>At1g66235.1 68414.m07518 expressed protein ; expression supported
           by MPSS
          Length = 265

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 615 CFGTEENGAAFHSISSYRPPLLHQNQHYKSIWTFD 719
           C     +GA+   I +    +L Q++H+KS W FD
Sbjct: 63  CENRRSSGASSDDIFNQAKEMLMQDKHFKSGWKFD 97


>At4g12940.1 68417.m02023 expressed protein hypothetical protein  -
           Arabidopsis thaliana,PIR2:T08948; expression supported
           by MPSS
          Length = 151

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 54  LLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDL 215
           L+ +SIAK+   +P      +  S+    +F F  +   ++R  N K PF+PDL
Sbjct: 17  LIESSIAKQ---KPDLDHVNVDMSEIDYSSF-FKQMIEGWEREANEKYPFRPDL 66


>At3g06180.1 68416.m00710 expressed protein 
          Length = 241

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +1

Query: 73  PKDSVSDPPSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTFSLNVSISMSTHS 252
           P  S S   S  +     + S  H C H     ++ + +I  LFS  F L+   S   HS
Sbjct: 20  PSSSASRSASNHSSSSSSSSSSLHLCKHSPSATLDLLILILVLFSGAFLLSSYFSYLFHS 79

Query: 253 FQQDSSCHPS 282
           F   SS  PS
Sbjct: 80  FSLLSSHFPS 89


>At1g08470.1 68414.m00938 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 390

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 590 TNLSMVRPLFWNGRKWSGFPFHLIL*TSIATSKPTL 697
           T ++  R LFWNG +W+ F +     + +   KP+L
Sbjct: 84  TGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSL 119


>At1g04590.2 68414.m00453 expressed protein isoform contains GG
           acceptor splice site at intron 7
          Length = 384

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 536 EANRERSYGVGLHTQTSSEDDLYCRKLADIS*SGQKSRQWHHASRLMSGMLSKGR 372
           E N+E  YG  L    + E +     L  +  S +K  QWH   +++  +LSKG+
Sbjct: 157 EDNKEAVYGA-LDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSKGQ 210


>At1g04590.1 68414.m00452 expressed protein isoform contains GG
           acceptor splice site at intron 7
          Length = 381

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 536 EANRERSYGVGLHTQTSSEDDLYCRKLADIS*SGQKSRQWHHASRLMSGMLSKGR 372
           E N+E  YG  L    + E +     L  +  S +K  QWH   +++  +LSKG+
Sbjct: 157 EDNKEAVYGA-LDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSKGQ 210


>At5g08540.1 68418.m01016 expressed protein similar to unknown
           protein (pir||T27191)
          Length = 346

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 144 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQL 254
           F    + R Y R+  ++ PF PDL  + I+L + S L
Sbjct: 186 FNMEEILRKYIRYALNEKPFNPDLVADLIHLRKASGL 222


>At4g27010.1 68417.m03885 expressed protein  ; expression supported by
            MPSS
          Length = 2535

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 151  FHLYVEPINDIPIIKFLF 204
            F+LY +PIN++P+  F F
Sbjct: 1927 FYLYDDPINEVPVFSFNF 1944


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 47  PDFTFGLHCQKTPFPTLLPSLQTFS 121
           PD T  L   +TPFP  +P +++FS
Sbjct: 848 PDVTQNLPVSRTPFPARVPVVKSFS 872


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein similar
            to lysosomal alpha-mannosidase GI:3522867 from [Homo
            sapiens]
          Length = 1019

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 310  PVGIRTICVRLDDSLSLVGSCEYSLRL 230
            P+ IRT+ ++ DD + +VG  E   RL
Sbjct: 993  PMEIRTLLIKFDDQIEMVGDKEQQHRL 1019


>At1g31630.1 68414.m03884 MADS-box family protein similar to
           MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
          Length = 339

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 183 PNHKVPFQPDLFVECINLNEYSQL 254
           PNH+ PFQ D F+E +    Y Q+
Sbjct: 267 PNHQYPFQDDPFMEMLMEYPYEQV 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,408,248
Number of Sequences: 28952
Number of extensions: 420377
Number of successful extensions: 1306
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)