Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021050
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.79 
SB_9807| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.00031)            30   1.8  
SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)               30   1.8  
SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)               30   2.4  
SB_19552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)                 29   5.5  
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)               28   9.7  

>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 371 DIQLKKWRIGKPIGRGSFGRIYLASDDVDNEVTK 472
           ++ L ++ IGK IG+GS+G ++L+    D +  K
Sbjct: 37  NMSLDRYTIGKCIGKGSYGEVFLSKHKKDKKQAK 70


>SB_9807| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.00031)
          Length = 310

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 389 WRIGKPIGRGSFGRIYLASD 448
           WR GK +G G+FG++Y+  D
Sbjct: 190 WRKGKLLGAGAFGQVYMCHD 209


>SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)
          Length = 335

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 386 KWRIGKPIGRGSFGRIYL 439
           K+R+G+ IG GSFG IYL
Sbjct: 8   KYRLGRKIGSGSFGDIYL 25


>SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)
          Length = 355

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 386 KWRIGKPIGRGSFGRIYLASDDVDNE 463
           K+R+ + IG GSFG IYLA +  + E
Sbjct: 18  KYRLVRKIGSGSFGDIYLAINTTNGE 43


>SB_19552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 401 KPIGRGSFGRIYLASD 448
           KPIGRGSFG+ +LA +
Sbjct: 133 KPIGRGSFGKCFLAKN 148


>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
          Length = 1084

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 167 RIYRDTVGKSLEGKYSKVIVCWNAAAGTRFVQLPLHPKKKVKTLEDETSSLDV 325
           RI   ++ +S EG  SKV         TRF      P  +  T+EDE  ++D+
Sbjct: 359 RIQPSSISESDEGHLSKVSDDSTEEYSTRFAPYEEEPLARPGTIEDEEENVDL 411


>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
          Length = 1481

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 275  PKKKVKTLEDETSSLDVSFCD-DEALP 352
            PK K  TL+DE +S D+  C   EA+P
Sbjct: 1358 PKVKTSTLDDEVNSDDIDLCQLLEAIP 1384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,992,131
Number of Sequences: 59808
Number of extensions: 472644
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)