Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021049
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 294 NKSLCKELIVPISHHPVTLCRCN 226
           N  LC E+    S +  TLC+C+
Sbjct: 652 NVQLCSEISESYSSNNKTLCKCD 674



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 390 SSMPNELSSIPANFVLVVESSSFKISHSLVVNNKSLCK 277
           +SM   L+  P  F   V+  S +IS S   NNK+LCK
Sbjct: 637 ASMKENLNVYP-EFQENVQLCS-EISESYSSNNKTLCK 672


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 320 LKEELSTTKTKLAGIEDNS-FGMDDMVQSLKEEINEMKAQNDR 445
           L + +S       G+  NS  G  +  QSL+ +  EM AQNDR
Sbjct: 305 LAKAVSKNGVLFVGLVGNSAVGCWNEHQSLQRQNLEMVAQNDR 347


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 529 VENTLSELLAERANLEEQIAEINGKAQAFEE 621
           V+N L EL  ER     Q  E+ G+ QAF +
Sbjct: 626 VDNLLGELGGERLLKLAQGDEMCGQEQAFRK 656


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 719 ISLTCFSDSFNVVSADTYFSWKLSRSRLTVINSSSNA*AFP 597
           +++  F  + N+ S       K S   +T +NS+S+   FP
Sbjct: 381 LTVHSFPSTLNIPSVKIDEDQKCSIESITSVNSTSSPKPFP 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,432
Number of Sequences: 438
Number of extensions: 3546
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)