Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021046
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   6.4  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   6.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 785 NLEFDIAVLILLCNYCCYYVLFL 717
           +L F   ++ILLC Y  YY   L
Sbjct: 225 HLLFYCVLIILLCIYYFYYAFIL 247



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 776 FDIAVLILLCNYCCYYVLFL 717
           F  A +ILLC Y  YY   +
Sbjct: 103 FYYAFIILLCVYYFYYAFII 122



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 776 FDIAVLILLCNYCCYYVLFL 717
           F + +L+L+C Y  YY+  L
Sbjct: 248 FTVHLLLLVCIYYFYYMHLL 267


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 508  HSSRTTSH*NHDDRRTQLPEPDRNNTS 588
            H ++     N+D RR  L    RNN +
Sbjct: 1524 HVNKAFEEDNYDHRRNSLQMQQRNNVT 1550


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 508  HSSRTTSH*NHDDRRTQLPEPDRNNTS 588
            H ++     N+D RR  L    RNN +
Sbjct: 1524 HVNKAFEEDNYDHRRNSLQMQQRNNVT 1550


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 508  HSSRTTSH*NHDDRRTQLPEPDRNNTS 588
            H ++     N+D RR  L    RNN +
Sbjct: 1524 HVNKAFEEDNYDHRRNSLQMQQRNNVT 1550


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 508  HSSRTTSH*NHDDRRTQLPEPDRNNTS 588
            H ++     N+D RR  L    RNN +
Sbjct: 1524 HVNKAFEEDNYDHRRNSLQMQQRNNVT 1550


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = -2

Query: 369 IPHNMYCSLLSLPFQSAHSVSLLYVQRFVCLSFLQAQAESSLEFNCSAFXIVSLYEYFDS 190
           +P  +   LL +  Q   S    ++ RF+CL F       S  +   +  +  +++Y D 
Sbjct: 53  LPLTLLYKLLGI-IQFPISAHFSFMSRFLCLPFYSYFFYLSYIYTTYSRKLSGIFKYIDQ 111

Query: 189 L 187
           +
Sbjct: 112 M 112


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = -2

Query: 369 IPHNMYCSLLSLPFQSAHSVSLLYVQRFVCLSFLQAQAESSLEFNCSAFXIVSLYEYFDS 190
           +P  +   LL +  Q   S    ++ RF+CL F       S  +   +  +  +++Y D 
Sbjct: 9   LPLTLLYKLLGI-IQFPISAHFSFMSRFLCLPFYSYFFYLSYIYTTYSRKLSGIFKYIDQ 67

Query: 189 L 187
           +
Sbjct: 68  M 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,964
Number of Sequences: 336
Number of extensions: 4088
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)