Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021046
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    30   0.33 
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    30   0.33 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.4  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   9.4  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
 Frame = +3

Query: 321 HFEMAETADCSTYC-----EGCLACLTAYFI--YICTETHYEKHLRKVSKFIATQNERVY 479
           H   A   D +T C     E CL  L A  I  Y+C+E H  +    +  F   ++ R Y
Sbjct: 6   HSFWATAVDTATSCHFISSENCLVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPY 65

Query: 480 NPRGV 494
            P G+
Sbjct: 66  RPPGL 70


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 285  QTFEHTIERLNEHFEMAETADCSTYCEGCLACLTA 389
            + +EHT E +    E  E+ DC    EGC  C+T+
Sbjct: 976  KAYEHTDELITMAIERIESCDCKVR-EGCPGCITS 1009


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 350  AVCCLCHFKVLIQSLYCMFKGLSVYPFFKLRRNLV 246
            +VCC+CH K  I    CM  G  +   F  R+N V
Sbjct: 1917 SVCCMCH-KTPILPAICMLCGSVI--CFNARQNTV 1948


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 527 VIEITMIDVPNCQSPTGIT 583
           +++I  +D+PNC S  G+T
Sbjct: 546 LLKINSLDIPNCFSDVGLT 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,800
Number of Sequences: 5004
Number of extensions: 67999
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)