Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021046
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524     29   3.2  
09_06_0221 - 21649030-21649290,21649553-21649610,21649943-216502...    29   4.2  
09_01_0164 + 2424158-2424164,2424165-2424536,2428623-2428807,242...    29   5.6  
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    28   7.4  
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919...    28   9.7  
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     28   9.7  
07_03_0135 + 14070212-14070311,14072207-14072968,14082526-140826...    28   9.7  

>02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524
          Length = 161

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
 Frame = +2

Query: 344 RLQYIL*GMPCLSDCLLHLYL--------YRDTL*KAFKESLKIHSNTKRKGIQP 484
           R QY L   PC  DCL+HL+         YR+   + F  SL  H+N +++G  P
Sbjct: 94  RSQYGLQETPC-PDCLVHLWCEPCALCQEYRELKKRGFDMSLGWHANMEKQGQNP 147


>09_06_0221 -
           21649030-21649290,21649553-21649610,21649943-21650292,
           21650605-21650799
          Length = 287

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 288 TFEHTIERLNEHFEMAETADCSTYCEGCLACLTAY 392
           TFEHT++ L  +    +  DCST  +    CL  Y
Sbjct: 220 TFEHTVDILYRNVIQKKKEDCSTMQQLGATCLAGY 254


>09_01_0164 +
           2424158-2424164,2424165-2424536,2428623-2428807,
           2429045-2429200
          Length = 239

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 618 AIMWWSSMSDRCVIPVGLWQ 559
           AIMWW+ +SD  VIP   W+
Sbjct: 167 AIMWWAGLSDEGVIPT-TWE 185


>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 300 TIERLNEHFEMAETADCSTYCEGCLACLTAY--FIYICTETHYEKHLRKVSKFIATQNER 473
           T+E  +  +E+ ETA C +  EG  A +TA+        E   +K + K+ K  +   ER
Sbjct: 481 TVESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYSLER 540

Query: 474 VYNP--RGVHITD 506
           ++N   R  H  D
Sbjct: 541 IFNTLRRHCHFQD 553


>10_08_0252 -
           16191136-16191279,16191639-16191750,16191833-16191924,
           16192564-16192641,16192764-16192796,16193712-16193771,
           16193912-16193999,16194155-16194180
          Length = 210

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 345 DCSTYCEGCLACLTAYFIYIC 407
           D   YC GC AC+  YF   C
Sbjct: 69  DVQQYCSGCGACMGKYFCEKC 89


>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 401 INEVGSQT-GKASLTICTAVCCLCHFKVLI 315
           I  VG Q+  + SL +CT  CC C+   L+
Sbjct: 880 IGIVGQQSIAERSLELCTGACCACYVPRLV 909


>07_03_0135 +
           14070212-14070311,14072207-14072968,14082526-14082696,
           14082718-14082950,14082966-14083310,14084955-14084966
          Length = 540

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 618 AIMWWSSMSDRCVIPVGLWQ 559
           AIMWW+ +SD  V+P   W+
Sbjct: 222 AIMWWAGLSDEGVLPT-TWE 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,602,525
Number of Sequences: 37544
Number of extensions: 398493
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)