Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021046
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    30   2.0  
At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP glucosyl...    28   6.1  
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ...    28   8.1  

>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 297 HTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKH 431
           H     N H +     D +TYC GC   +     Y C E+ +  H
Sbjct: 362 HPFHSHNLHLQTTRAYDENTYCRGCALPIYEGQFYSCIESDFILH 406


>At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP
           glucosyltransferase (SUS1) identical to SP|P49040
           Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana}
          Length = 808

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = -2

Query: 354 YCSLLSLPFQSAHSVSLLYVQRFVCLSFLQ-----AQAESSLEFNCSAFXIVSLYEYFDS 190
           YC +L +PF++   +   ++ RF    +L+     A  E S E N     I+    Y D 
Sbjct: 361 YCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIG--NYSDG 418

Query: 189 LLCGSLL 169
            L  SLL
Sbjct: 419 NLVASLL 425


>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 530

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 327 EMAETADCSTYCEGCLACLTAYFIYICTETHYEKH 431
           EM+ T D S YC+GC   +     Y C E  +  H
Sbjct: 236 EMSITYDESKYCQGCALPIYEGQFYSCMECDFILH 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,462
Number of Sequences: 28952
Number of extensions: 341919
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)