Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021045
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    56   3e-10
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.70 
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   8.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 56.0 bits (129), Expect = 3e-10
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
 Frame = +2

Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLR---ALILSPTRELALQTLRFVRELG 424
           S A+TGSGKTA F+LPI+  LL   N P    N      +I+SPTRELA+Q     ++  
Sbjct: 200 SCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFA 259

Query: 425 KFTGLTSAAILGGESIEQQ 481
             + +  A I GG S   Q
Sbjct: 260 YNSTVKVAVIYGGTSTNHQ 278



 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
 Frame = +1

Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR--LPSS--RQ 675
           +I+VATPGR         +  +++K  V DEADR+ ++GF   ++E+ +   +P++  RQ
Sbjct: 287 HILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQ 346

Query: 676 TLLFSATLPKMLVEFA 723
           TL+FSAT P+ + + A
Sbjct: 347 TLMFSATFPEEVQQLA 362



 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +3

Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLVXXXXXXR 311
           +F++ GL   +L+ + K GY +PT IQ+  IP+ L+G+D++   + G  K          
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 312 NFL 320
           N L
Sbjct: 219 NLL 221


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 380 RELALQTLRFVRELGKFTGLTSAAILG 460
           R+  ++ LR + E G+F GL S  +LG
Sbjct: 156 RQNPVKFLRAIEEYGRFFGLDSQRLLG 182


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 519 CNTWALLTHLH*DVLKVRQHQNSCF 593
           CN    L +LH +++KV +  NS +
Sbjct: 227 CNKIKHLVNLHKNLVKVAKDHNSLY 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,054
Number of Sequences: 336
Number of extensions: 3336
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)