Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021045
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 123 3e-29
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 75 2e-14
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 67 3e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 65 1e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 63 4e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 62 7e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 9e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 60 5e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 59 8e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 1e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 58 1e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 3e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 57 3e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 6e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 54 2e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 2e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 53 4e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 52 1e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 51 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 5e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 48 2e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 5e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 45 1e-05
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 30 0.44
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 30 0.44
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 29 0.77
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.8
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.3
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 123 bits (296), Expect = 3e-29
Identities = 60/94 (63%), Positives = 76/94 (80%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IVVATPGRFLH+ +EM L+L +I+ VVFDEADRLFE+GF QL EI LP+SRQTLLF
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLF 250
Query: 688 SATLPKMLVEFARAGLSDPTLDKIRVDWKLPSTL 789
SATLP+ LV+FA+AGL DP L ++ V+ K+ + L
Sbjct: 251 SATLPRTLVDFAKAGLQDPVLVRLDVESKVSADL 284
Score = 87.8 bits (208), Expect = 2e-18
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTG 436
MARTGSGKTA FV+P++E L N RALILSP RELALQT++ V++ K T
Sbjct: 112 MARTGSGKTAAFVIPMIEHL----KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTD 167
Query: 437 LTSAAILGGESIEQQFNVMSG 499
L S AI+GG S+E+QF+++SG
Sbjct: 168 LRSVAIVGGVSLEEQFSLLSG 188
Score = 60.1 bits (139), Expect = 4e-10
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
FQSMGL+ +L+ I K+G+K PTPIQRKTIP+ L G+DVV G K
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 74.5 bits (175), Expect = 2e-14
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
+IV+ATPGRF+ H+ ++NI+I+V DEADR+ E GF ++L EI P SRQT+L
Sbjct: 382 DIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTML 441
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT+ + + R L+ P
Sbjct: 442 FSATMTDKVDDLIRLSLNRP 461
Score = 60.5 bits (140), Expect = 3e-10
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLV-PNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTG 436
A TGSGKTA F++PILE+LL P PT R LIL PTRELA+Q ++ FT
Sbjct: 303 AVTGSGKTAAFIVPILERLLYRPKKVPTT----RVLILCPTRELAMQCHSVATKIASFTD 358
Query: 437 LTSAAILGGESIEQQ 481
+ +GG S++ Q
Sbjct: 359 IMVCLCIGGLSLKLQ 373
Score = 59.7 bits (138), Expect = 5e-10
Identities = 30/74 (40%), Positives = 41/74 (55%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLVXXXXXXR 311
+FQSM LS P+LKG++ G++ PT IQ KTIP+AL GKD+V G K
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 312 NFLFRTTNLHLERI 353
L+R + R+
Sbjct: 320 RLLYRPKKVPTTRV 333
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 66.9 bits (156), Expect = 3e-12
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
NI+V TPGR L HI + +++++ DEADR+ ++GF L I + LP RQT+L
Sbjct: 162 NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTML 221
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT K + + AR L +P
Sbjct: 222 FSATQTKSVKDLARLSLQNP 241
Score = 62.5 bits (145), Expect = 7e-11
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+TGSGKT F++P++E L K T L AL++SPTRELA+QT + ++G+
Sbjct: 83 AKTGSGKTLAFIVPLIENLY--RKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSF 140
Query: 440 TSAAILGGESIEQQFNVMSG-----SSPT*LLQHL 529
++ I+GG + +++ +S +P LLQH+
Sbjct: 141 SAGLIIGGNNYKEEKERLSRMNILVCTPGRLLQHI 175
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.9 bits (151), Expect = 1e-11
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS-SRQTL 681
N++VATPGR L H+ N++ +V DEADR+ E+GF +++++I LPS +RQTL
Sbjct: 213 NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTL 272
Query: 682 LFSATLPKMLVEFARAGLSDPTLDKIRVDWKLPST 786
LFSAT + + AR L L + VD P++
Sbjct: 273 LFSATQTTKVEDLARISLKPGPL-YVNVDSGKPTS 306
Score = 56.8 bits (131), Expect = 3e-09
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+TGSGKT F++P +E L KP G + +I+SPTRELALQ +EL K+
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKPRNGTGV--IIISPTRELALQIFGVAKELLKYHHQ 190
Query: 440 TSAAILGG 463
T ++GG
Sbjct: 191 TFGIVIGG 198
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
F + LS + K I + G++ T IQ+++IP L G+DV+ + G K L
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTL 141
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
+++V TPGR + H+ L N+K ++ DEADRL ++ FG + +I +P R+TLL
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLL 225
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT+ + + RA L P
Sbjct: 226 FSATMTSKVEKLQRASLHQP 245
Score = 56.0 bits (129), Expect = 6e-09
Identities = 32/88 (36%), Positives = 50/88 (56%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFV 412
+++ +A+TGSGKTA F LP++++L N P+P A++L+PTRELA Q
Sbjct: 81 LNKRDVIGLAQTGSGKTAAFALPVIQELW---NNPSP---FFAVVLAPTRELAYQISEQF 134
Query: 413 RELGKFTGLTSAAILGGESIEQQFNVMS 496
+G G+ S I+GG + Q +S
Sbjct: 135 EAIGGSIGVRSVVIVGGMDMVTQAVALS 162
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ +G+ + + K G+K PTPIQ++ IP+ L +DV+ + G K
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK 96
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.5 bits (145), Expect = 7e-11
Identities = 31/77 (40%), Positives = 47/77 (61%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
I +ATPGR L + L + +V DEADR+ ++GF Q+++I ++ RQT++FS
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFS 307
Query: 691 ATLPKMLVEFARAGLSD 741
AT PK + AR L+D
Sbjct: 308 ATWPKEVQRLARDYLND 324
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKF 430
++ TGSGKT + LP + + N +P +PG L+L+PTRELA+Q + + GK
Sbjct: 165 ISATGSGKTLSYCLPAIVHI---NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKS 221
Query: 431 TGLTSAAILGG 463
+ + + + GG
Sbjct: 222 SRIRNTCVYGG 232
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
F+ G VLK + + G++ PTPIQ++ P+A++G+D+V G K L
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTL 174
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.1 bits (144), Expect = 9e-11
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIK---IVVFDEADRLFELGFGEQLQEICARLPSSRQ 675
+ IVV TPGR + + ++ N+ +V DEADR+F+LGF Q+ I + RQ
Sbjct: 542 AEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQ 601
Query: 676 TLLFSATLPKMLVEFARAGLSDP 744
T+LFSAT P+ + AR L P
Sbjct: 602 TVLFSATFPRAMEALARKVLKKP 624
Score = 49.2 bits (112), Expect = 7e-07
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPTP-GKNLRALILSPTRELALQTLRFVRELGKFT 433
+A+TGSGKT F+LP+ + + +P G+ A+I++PTRELA+Q R + K
Sbjct: 461 VAKTGSGKTIAFLLPMFRH--IKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLL 518
Query: 434 GLTSAAILGGESIEQQ 481
+ + GG I+ Q
Sbjct: 519 NIRACCAYGGAPIKDQ 534
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
++ GLS + I GY++PT IQ + IP +G+DV+ + G K +
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTI 470
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 59.7 bits (138), Expect = 5e-10
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++V+ TPGR + + K +++I++ DEAD L ++GF LQ I ++LP R+T LF
Sbjct: 134 SVVIGTPGRLNEMLSHISSK--HLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLF 191
Query: 688 SATLPKMLVEFAR-AGLSDP-----TLDKIRVDWKLPSTL 789
SAT+ + F + AGL + T+ ++D + PS+L
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSL 231
Score = 44.0 bits (99), Expect = 3e-05
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL 421
A TGSGKT ++LP +K+ + T L ALI++PTRELA Q +EL
Sbjct: 45 AVTGSGKTLAYLLPCFDKV---TRRDTDETGLGALIVAPTRELATQIFNVTKEL 95
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+FQS+ + + + +G+K+ TP+Q IP+ L KD+V G K L
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTL 53
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 58.8 bits (136), Expect = 8e-10
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++VV TPGR + L D +++ V DEAD + GF +Q+ +I LP + Q +L
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLL 198
Query: 688 SATLPKMLVEFARAGLSDPTLDKIRVD 768
SAT+P+ ++E + DP ++ D
Sbjct: 199 SATMPQDVLEVTTKFMRDPIRILVKKD 225
Score = 47.2 bits (107), Expect = 3e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+ A++G+GKTA F + +L+K+ T K +ALIL+PTRELA Q + V LG
Sbjct: 61 AQAQSGTGKTATFSISVLQKI------DTSLKQCQALILAPTRELAQQIQKVVVALGDLM 114
Query: 434 GLTSAAILGG 463
+ A +GG
Sbjct: 115 NVECHACIGG 124
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F M L +L+GI G+++P+ IQ++ I L +DV+ + G K
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGK 69
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++V TPGR + L+ N+K+++ DEAD L GF EQ+ +I LP Q ++
Sbjct: 141 HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVV 200
Query: 688 SATLPKMLVEFARAGLSDPTLDKIRVD 768
SATLP+ ++E ++P ++ D
Sbjct: 201 SATLPQDVLEMTNKFTTNPVRILVKRD 227
Score = 46.4 bits (105), Expect = 5e-06
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+ A++G+GKTA F + IL+ + ++ +ALILSPTRELA+Q V LG
Sbjct: 63 AQAQSGTGKTATFSIGILQSI------DLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 434 GLTSAAILGGESI 472
+ A +GG S+
Sbjct: 117 NVQCHACIGGTSV 129
Score = 34.3 bits (75), Expect = 0.020
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F+ M L +L+GI GY+ P+ +Q + I G+DV+ + G K
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGK 71
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEIC--ARLPS--SRQ 675
+++ ATPGR + + + L NIK +V DEADR+ ++GF Q++ I A + S RQ
Sbjct: 307 DLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQ 366
Query: 676 TLLFSATLPKMLVEFARAGLSD 741
TL+FSAT P+ + AR L D
Sbjct: 367 TLMFSATFPRDIQLLARDFLKD 388
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F S L+ +L+ I GY QPTP+Q+ +IPI +G+D++ + G K
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGK 219
Score = 35.1 bits (77), Expect = 0.012
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTP-----GKNLR-------ALILSPTRELALQTL 403
A+TGSGKTA F+ PIL P G R LIL+PTREL Q
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 404 RFVRELGKFTGLTSAAILGGESIEQQ 481
R+ + + A+ GG I Q
Sbjct: 273 EESRKFCYRSWVRPCAVYGGADIRAQ 298
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.8 bits (131), Expect = 3e-09
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 20/102 (19%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCL-KLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS---- 669
++IVVATPGR L C+E L L VV DEADR+ ++GF + + +I + LPSS
Sbjct: 376 AHIVVATPGRLLD-CLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASE 434
Query: 670 ---------------RQTLLFSATLPKMLVEFARAGLSDPTL 750
RQT++FSATLP + A++ L +P +
Sbjct: 435 KDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVM 476
Score = 49.6 bits (113), Expect = 5e-07
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKL--LVPNNKPTPGKNLRALILSPTRELALQTLR 406
+ R+ +A TGSGKTA F++P++ + L P + A++L+PTRELA Q
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQV 343
Query: 407 FVRELGKFTGLTSAAILGGESIEQQFNVMS 496
+ + G +++GG + E+Q MS
Sbjct: 344 EGNKFAEPLGFRCVSVVGGHAFEEQSFQMS 373
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
++ GL +LK + K YK+P+ IQR IP+ L KD++ E G K
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGK 299
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP-----SS 669
+++++ TPGR L + + + + +V DEADR+ + GF + ++ I + P S
Sbjct: 286 ASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGS 345
Query: 670 RQTLLFSATLPKMLVEFARAGLSDP 744
RQT+ FSAT P+ + A L DP
Sbjct: 346 RQTVFFSATWPESVRALAATFLKDP 370
Score = 53.6 bits (123), Expect = 3e-08
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+A TGSGKT F +P L+ L + +NK P R L++SPTRELA+QT + L + T
Sbjct: 208 IAETGSGKTVAFGIPALQYLNGLSDNKSVP----RVLVVSPTRELAIQTYENLNSLIQGT 263
Query: 434 GLTSAAILGGESIEQQFNVMSGSS 505
L + + GG +Q +S
Sbjct: 264 NLKAVVVYGGAPKSEQARAAKNAS 287
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F + +S + +G+ + YK+PTPIQ T P L G+DVV E G K
Sbjct: 169 FDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGK 215
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 56.0 bits (129), Expect = 6e-09
Identities = 36/83 (43%), Positives = 47/83 (56%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFV 412
++ C A+TGSGKTA F LPI+EK +K G + ALIL+PTRELA+Q
Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKW----SKDPSG--IFALILTPTRELAIQIDEQF 95
Query: 413 RELGKFTGLTSAAILGGESIEQQ 481
LG L A I+GG + +Q
Sbjct: 96 AALGANLNLKHALIVGGMDMIRQ 118
Score = 48.8 bits (111), Expect = 9e-07
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Frame = +1
Query: 508 NIVVATPGRFLHICI----EMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS-- 669
++VVATPGR + E L IK +V DEADRL F + L + + LP+S
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASED 186
Query: 670 RQTLLFSATL 699
RQTLLF+AT+
Sbjct: 187 RQTLLFTATV 196
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEICARLPSSRQTLL 684
+IVVATPGR + E LK++++K V DE D+L E + +QE+ P +Q ++
Sbjct: 175 HIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMM 234
Query: 685 FSATLPKMLVEFARAGLSDPTLDKIRVDWKLPSTL 789
FSATL + + + +P +I VD + TL
Sbjct: 235 FSATLSNEIRPICKKFMQNPL--EIYVDDETKLTL 267
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TG 436
A++G GKTA FVL L+++ +P G+ + L+L TRELA Q K+
Sbjct: 95 AKSGMGKTAVFVLSTLQQI-----EPVDGE-VSVLVLCHTRELAFQIKNEYARFSKYLPD 148
Query: 437 LTSAAILGGESIEQQFNVMSGSS 505
+ +A GG +I+Q S
Sbjct: 149 VRTAVFYGGINIKQDMEAFKDKS 171
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IV+ATP R + L LD +K +V DEAD + G+ E ++ + LP Q+ L
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLM 201
Query: 688 SATLPKMLVEFARAGLSDP 744
SATL K + + +P
Sbjct: 202 SATLSKNIASLQKLVCRNP 220
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 430
+ ARTGSGKTA +++PILE LL + + AL+L PTRELA Q + +L F
Sbjct: 56 AQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAF 114
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 123 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
S F L + + I K +++PT +Q +TIP+AL GKD+V G K
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGK 64
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 53.2 bits (122), Expect = 4e-08
Identities = 30/71 (42%), Positives = 42/71 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKTA FV+P LEK+ +K ++ LIL PTRELALQT + + LGK +
Sbjct: 88 AKNGTGKTAAFVIPSLEKVDTKKSK------IQTLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 440 TSAAILGGESI 472
GG ++
Sbjct: 142 KVMVTTGGTTL 152
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IVV TPGR L + + V DEAD+L F ++++ + P +RQ L+
Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLY 223
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P ++ F L+ P
Sbjct: 224 SATFPLIVKNFMDKHLNKP 242
Score = 42.7 bits (96), Expect = 6e-05
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +L GI + G+++P+PIQ ++IPIAL+G+D++ + G K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR-QTLL 684
++ + TP R + I+ L + ++ V DEADRLFE GF EQ I + SS L
Sbjct: 168 DMCIGTPMRLVQ-AIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSL 226
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT+P + E A+ DP
Sbjct: 227 FSATIPSRVEELAKVVTVDP 246
Score = 42.7 bits (96), Expect = 6e-05
Identities = 27/60 (45%), Positives = 35/60 (58%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A TGSGKT ++ PIL+KL + PG RA+I++PTREL Q R +L T L
Sbjct: 90 APTGSGKTIAYLFPILQKLQL----HVPG-GYRAIIVAPTRELCEQIYRQAEKLSFGTSL 144
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.2 bits (117), Expect = 2e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Frame = +2
Query: 236 DRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVR 415
+ E A+TG+GKT F+L + +L + K + ++ILSPTRELALQ R
Sbjct: 75 NEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSK-IHSVILSPTRELALQIFEEAR 133
Query: 416 ELGKFTGLTSAAILGGESIEQQFNVM 493
+L TG+ + +GG S ++ N +
Sbjct: 134 KLTYGTGIRVSYAIGGNSKMREENAI 159
Score = 44.0 bits (99), Expect = 3e-05
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Frame = +1
Query: 505 SNIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR-QT 678
+N+++ATPGR H+ L+ + + DEADRL ++GF E + I + +++ +
Sbjct: 164 ANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRK 223
Query: 679 LLFSATLP 702
L FSAT+P
Sbjct: 224 LCFSATMP 231
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 49.6 bits (113), Expect = 5e-07
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGK--- 427
A+TGSGKT ++LPI+++L+ +P N T + A+I++PTREL Q +L
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 428 FTGLTSAAILGGE 466
+ S ++GGE
Sbjct: 245 SHWIVSCNVIGGE 257
Score = 45.2 bits (102), Expect = 1e-05
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
NI++ TPGR H+ L + ++ VV DE DRL ++GF E L +I + L S +
Sbjct: 271 NILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIK 330
Query: 685 FSATLPKMLVEFARAGLSDPTLDKI 759
++P V + T+ ++
Sbjct: 331 KDLSIPSRKVTMLCSATMKDTVKRL 355
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLF-ELGFGEQLQEICARLPSSRQTL 681
+ IV+ TPG + + L +IK+ V DEAD + + G G+Q I LP + Q +
Sbjct: 231 AQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIV 290
Query: 682 LFSATLPKMLVEFA 723
LFSAT + + ++A
Sbjct: 291 LFSATFSERVEKYA 304
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
+++G+GKTA F L +L + V + P P +A+ L+P+RELA Q + V E+GK+T +
Sbjct: 160 SQSGTGKTAAFALTMLSR--VDASVPKP----QAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 440 TSA 448
+A
Sbjct: 214 KTA 216
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.4 bits (105), Expect = 5e-06
Identities = 27/79 (34%), Positives = 45/79 (56%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A TGSGKT F +PILE L + K ++AL+++PTRELA Q + + +
Sbjct: 166 ADTGSGKTLAFGIPILEHCL----RNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNI 221
Query: 440 TSAAILGGESIEQQFNVMS 496
+I GG ++++Q +++
Sbjct: 222 RVMSITGGLAVQKQQRLLN 240
Score = 43.2 bits (97), Expect = 4e-05
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCL--KLDNIKIVVFDEADRLFELGFGEQLQEICARL----PSS 669
++VVATPGR + E L IK +V DEADRL + E+L ++ L +
Sbjct: 244 HVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQ 303
Query: 670 RQTLLFSATLPKMLVEFARAGLSDPTLDK 756
RQT +FSAT + L + + + +K
Sbjct: 304 RQTFIFSATFDEGLQQRLKKNMKGNITEK 332
Score = 34.3 bits (75), Expect = 0.020
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
A+ LS +L ++K G+ +P PIQ IP A G D++ + G K L
Sbjct: 123 AWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTL 174
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +2
Query: 251 CSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 430
C A TGSGKT +V+PI++ L +++ P LR +++ PTREL +Q +
Sbjct: 177 CVSAATGSGKTLSYVIPIVQCL---SHRTVP--RLRCVVIVPTRELTVQVAKTFEYYMSG 231
Query: 431 TGLTSAAILGGESIEQQFNVMSG 499
GL A G +S+ + ++G
Sbjct: 232 AGLQVCAWTGQKSLRHETYQLNG 254
Score = 35.5 bits (78), Expect(2) = 4e-05
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEI 648
+++V+TPGR + HI + L +++ +V DEADRL + F + + +
Sbjct: 262 DVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTV 309
Score = 27.1 bits (57), Expect(2) = 4e-05
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 655 RLPSSRQTLLFSATLPKMLVEFARAGLSDPTL 750
RLPS Q L+FSATL + + A L +P L
Sbjct: 347 RLPSPLQKLVFSATLTRDPSKIASLKLHNPRL 378
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 574 NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFA 723
+++ V+FDE + +L G +E+ LP +L SAT+P EFA
Sbjct: 386 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPN-TKEFA 434
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 29.9 bits (64), Expect = 0.44
Identities = 24/60 (40%), Positives = 30/60 (50%)
Frame = +2
Query: 239 RERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRE 418
+ R TGSGKTA F P K P +P + + LIL +ELALQ L+ RE
Sbjct: 46 KRRIAVSLATGSGKTALF--PHFIKY-APTLRPN---SEQCLILVHRKELALQALKHCRE 99
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 568 LDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFAR 726
+ I V+FDE + + G +E LP + + + SATLP L +FAR
Sbjct: 229 MHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNAL-QFAR 280
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 531 PRCCNNYVGEEPDITLNCCSMDSPPRIAALVNPVNFPSSLT 409
P ++ + PD+ +CCS P + AL V+F S+ T
Sbjct: 1931 PLTVYQFICKAPDLFFSCCSHFIVPMVNALPKLVSFSSAST 1971
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 386 LALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 487
+A TL F+R +G G+T ++ E + Q F+
Sbjct: 485 MATATLMFIRTMGGSIGITVGEVIFNERVTQSFD 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,382
Number of Sequences: 5004
Number of extensions: 55502
Number of successful extensions: 224
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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