Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021045
         (794 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    58   3e-10
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    27   0.88 
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.2  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 58.0 bits (134), Expect = 3e-10
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
 Frame = +1

Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEIC--ARLP--SSRQ 675
           +++VATPGR L       +  +N+  VV DEADR+ ++GF   ++++   A +P    RQ
Sbjct: 301 HVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQ 360

Query: 676 TLLFSATLPKMLVEFA 723
           TL+FSAT P  + E A
Sbjct: 361 TLMFSATFPAEIQELA 376



 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = +2

Query: 260 ARTGSGKTACFVLPILEKLLVPNNK-PTPGKNLRALILSPTRELALQTLRFVRELGKFTG 436
           A+TGSGKTA F+LP++  LL   +      +N   +I++PTRELA+Q     R+    T 
Sbjct: 218 AQTGSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTK 277

Query: 437 LTSAAILGGESIEQQFNVMSG 499
           L      GG +++ Q  +M G
Sbjct: 278 LKVCVSYGGTAVQHQLQLMRG 298



 Score = 45.6 bits (103), Expect = 2e-06
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +3

Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLVXXXXXXR 311
           +F+  GL   V+  + K  Y +PTPIQR  IPI L G+D++   + G  K          
Sbjct: 175 SFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIH 234

Query: 312 NFLFRTTNLHL 344
           + L +  +L L
Sbjct: 235 HLLDKEDSLEL 245


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 0.88
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 636 ITRDLCSSPF*SSNVIILCNTT*NASRICE 725
           ++RD C SP   SNV I C T+ + +  CE
Sbjct: 415 VSRD-CHSPVNHSNVCIRCGTSGHLAATCE 443


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 574 CLTLSTSQCRCVRSAQVLQQLCW 506
           C+TLS+++   V  A+  ++L W
Sbjct: 822 CVTLSSTEAEYVALAEACRELLW 844


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,736
Number of Sequences: 2352
Number of extensions: 13209
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)