Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021045
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       55   9e-10
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   7.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   10.0 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.8 bits (126), Expect = 9e-10
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
 Frame = +1

Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEIC---ARLP-SSRQ 675
           +I+VATPGR L    +  +K  +++ +V DEADR+ ++GF   ++++      +P   RQ
Sbjct: 325 HILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQ 384

Query: 676 TLLFSATLPKMLVEFARAGLSD 741
           TL+FSAT P  +   AR  L++
Sbjct: 385 TLMFSATFPDEVQHLARRFLNN 406



 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +3

Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLVXXXXXXR 311
           +F++ GL   VL  I K GYK+PTP+Q+  +PI + G+D++   + G  K          
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 256

Query: 312 NFLFRTTNL 338
             L R+ +L
Sbjct: 257 TLLERSVDL 265



 Score = 41.5 bits (93), Expect = 9e-06
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +2

Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNL---RALILSPTRELALQTLRFVRELGKF 430
           A+TGSGKTA F +PI+  LL  +            + +I+SPTREL +Q  + + +    
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN 299

Query: 431 TGLTSAAILGGESIEQQFNVMS 496
           + L +    GG S+  Q   +S
Sbjct: 300 SILKTVVAYGGTSVMHQRGKLS 321


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 574 CLTLSTSQCRCVRSAQVLQQLCW 506
           C+ + TS C+   S +  Q L W
Sbjct: 290 CVNIVTSYCKTCISGRAFQVLTW 312


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 278 KTACFVLPIL 307
           KT CFV+PI+
Sbjct: 225 KTVCFVIPIM 234


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 156 NLGPLIEKHPNSSFS 112
           N GPL+E +PN S++
Sbjct: 100 NGGPLLEPYPNWSWA 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,763
Number of Sequences: 438
Number of extensions: 4160
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)