Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021045
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 97 1e-20
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 76 3e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 73 2e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 73 3e-13
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 73 3e-13
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 71 7e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 71 9e-13
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 71 1e-12
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 69 3e-12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 68 6e-12
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 68 6e-12
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 67 1e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 67 1e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 66 3e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 66 3e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 66 3e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 3e-11
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 65 4e-11
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 65 4e-11
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 65 4e-11
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 65 4e-11
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 65 4e-11
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 65 4e-11
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 64 8e-11
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 63 2e-10
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 61 7e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 61 1e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 61 1e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 60 1e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 60 2e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 59 4e-09
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 58 5e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 58 5e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 58 7e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 58 7e-09
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 58 9e-09
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 58 9e-09
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 58 9e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 58 9e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 58 9e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 58 9e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 57 1e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 57 2e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 57 2e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 54 8e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 54 8e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 54 8e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 54 1e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 53 2e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 52 3e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 51 8e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 51 8e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 51 1e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 50 2e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 48 9e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 47 1e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 47 2e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 2e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 46 3e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 42 6e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.008
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.17
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 31 0.88
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 31 0.88
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 29 3.6
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ... 29 3.6
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 28 6.2
At3g22160.1 68416.m02797 VQ motif-containing protein contains PF... 28 6.2
At1g08100.1 68414.m00886 high-affinity nitrate transporter (ACH2... 28 6.2
At1g08090.1 68414.m00885 high-affinity nitrate transporter (ACH1... 28 6.2
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 97.1 bits (231), Expect = 1e-20
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMC-LKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
++++ATPGR +H+ E+ + L ++ VVFDEAD LF +GF EQL +I +L +RQTLL
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLL 209
Query: 685 FSATLPKMLVEFARAGLSDPTLDKIRVDWKLPSTL 789
FSATLP L EFA+AGL +P L ++ V+ K+ L
Sbjct: 210 FSATLPSALAEFAKAGLREPQLVRLDVENKISPDL 244
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/81 (55%), Positives = 61/81 (75%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+MARTGSGKTA F++P+LEKL + P +RALILSPTR+LA QTL+F +ELGKFT
Sbjct: 70 AMARTGSGKTAAFLIPMLEKL----KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFT 125
Query: 434 GLTSAAILGGESIEQQFNVMS 496
L + ++GG+S+E QF ++
Sbjct: 126 DLRVSLLVGGDSMEDQFEELT 146
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +3
Query: 126 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
SG F+S+ L V I K+GYK PTPIQRKT+P+ L+G DVV G K
Sbjct: 27 SGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGK 78
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
N+++ TPGR I M L N++I++ DEADRL E+GF Q+ I +RLP R+T L
Sbjct: 144 NVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGL 203
Query: 685 FSATLPKMLVEFARAGLSDPTLDKIRVDWKLPST 786
FSAT + + E A+AGL +P ++R K S+
Sbjct: 204 FSATQTEGVEELAKAGLRNPVRVEVRAKSKSESS 237
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRE-LGKFTG 436
A TGSGKT FV+P++E L + P + +I+SPTREL+ Q + +
Sbjct: 60 AATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 437 LTSAAILGGESIEQQFNVM 493
+ S ++GG ++ ++
Sbjct: 120 VNSVLLVGGREVKADMKII 138
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/79 (45%), Positives = 50/79 (63%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IVVATPGR + + + LD + + DEADRL +LGF + ++E+ S RQTLLF
Sbjct: 280 HIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLF 339
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT+P + FAR+ L P
Sbjct: 340 SATMPTKIQIFARSALVKP 358
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLV 290
F+ M PVL + ++G QPTPIQ + +P+ L G+D++ G K LV
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLV 199
Score = 38.3 bits (85), Expect = 0.006
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Frame = +2
Query: 257 MARTGSGKTACFVLPIL-----EKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL 421
+A TGSGKT FVLP++ E++++P G+ LI+ P+RELA QT V +
Sbjct: 189 IAFTGSGKTLVFVLPMIMIALQEEMMMP---IAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Query: 422 ------GKFTGLTSAAILGGESIEQQFNVM 493
+ L S +GG + Q V+
Sbjct: 246 VAPLVEAGYPPLRSLLCIGGIDMRSQLEVV 275
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.5 bits (170), Expect = 3e-13
Identities = 37/78 (47%), Positives = 50/78 (64%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
IVVATPGR + + L + +V DEADR+F+LGF Q++ I ++ RQTLLFS
Sbjct: 354 IVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFS 413
Query: 691 ATLPKMLVEFARAGLSDP 744
AT+P + + AR LSDP
Sbjct: 414 ATMPWKVEKLAREILSDP 431
Score = 51.2 bits (117), Expect = 8e-07
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+A+TGSGKTA FVLP++ ++ P + G +I +PTRELA Q ++ K
Sbjct: 271 IAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPI--GVICAPTRELAHQIFLEAKKFSKAY 328
Query: 434 GLTSAAILGGESIEQQF 484
GL +A+ GG S +QF
Sbjct: 329 GLRVSAVYGGMSKHEQF 345
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ G S ++ I K+ Y++PT IQ + +PI L+G+DV+ + G K
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGK 278
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
+N+++ TPGR + M L N++I++ DEADRL ++GF +Q+ I +RLP R+T
Sbjct: 136 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 195
Query: 682 LFSATLPKMLVEFARAGLSDPTLDKIRVDWK 774
LFSAT + + + A+AGL +P L K D K
Sbjct: 196 LFSATQTQAVADLAKAGLRNPYL-KCEADQK 225
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVR 415
A TGSGKT F+LP +E + N+ P + +I+SPTREL+ Q + R
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAR 112
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 150 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
LS +++ + + G++ TP+Q +TIP + KDVV G K L
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTL 69
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 71.3 bits (167), Expect = 7e-13
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
+IVVATPGR + H+ M + LD++ +++ DEADRL + GF ++ E+ P RQT+L
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT+ + + E + L+ P
Sbjct: 350 FSATMTEEVKELVKLSLNKP 369
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/77 (46%), Positives = 48/77 (62%)
Frame = +2
Query: 251 CSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 430
C+ A TGSGKTA F LP LE+LL +P R LIL+PTRELA+Q ++ L +F
Sbjct: 208 CASAITGSGKTAAFALPTLERLLF---RPKRVFATRVLILTPTRELAVQIHSMIQNLAQF 264
Query: 431 TGLTSAAILGGESIEQQ 481
T + I+GG S+ +Q
Sbjct: 265 TDIKCGLIVGGLSVREQ 281
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/73 (35%), Positives = 35/73 (47%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLVXXXXXXRN 314
F + LS P+L+ GYK+PTPIQ IP+ALTG+D+ G K
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Query: 315 FLFRTTNLHLERI 353
LFR + R+
Sbjct: 229 LLFRPKRVFATRV 241
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 70.9 bits (166), Expect = 9e-13
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IVVATPGR I + + LD +++ DEADRL +LGF + ++ + S RQTLLF
Sbjct: 231 HIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLF 290
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT+P + FA + L P
Sbjct: 291 SATMPAKIQIFATSALVKP 309
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Frame = +2
Query: 257 MARTGSGKTACFVLPIL-----EKLLVPNNKPTPGKNLRALILSPTRELALQTL----RF 409
+A TGSGKT FVLP++ E++++P G+ AL++ P+RELA QT +F
Sbjct: 140 IAFTGSGKTLVFVLPMIILALQEEIMMP---IAAGEGPIALVICPSRELAKQTYDVVEQF 196
Query: 410 VRELGK--FTGLTSAAILGGESIEQQFNVM 493
V L + + L S +GG + Q +V+
Sbjct: 197 VASLVEDGYPRLRSLLCIGGVDMRSQLDVV 226
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLV 290
F M P+L+ + +G PTPIQ + +P+ L+G+D++ G K LV
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 150
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/79 (40%), Positives = 51/79 (64%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++VV TPGR + + LKL ++ +V DEAD++ +GF E ++ I LP+ RQ++LF
Sbjct: 230 DVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLF 289
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT+P + + AR L +P
Sbjct: 290 SATMPTWVKKLARKYLDNP 308
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPT----PGKNLRALILSPTRELALQTLRFVRELGK 427
A+TG+GKT F +PI+++L T G+ + L+L+PTRELA Q + ++E
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAP 205
Query: 428 FTGLTSAAILGGESIEQQFNVMS 496
+ L++ + GG S Q + ++
Sbjct: 206 Y--LSTVCVYGGVSYTIQQSALT 226
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
A + L + + + KRG PIQR + AL G+D++ + G K L
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTL 154
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 69.3 bits (162), Expect = 3e-12
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++ V TPGR + + L L ++ VV DEAD++ ++GF E ++ I +LP+ RQ+++F
Sbjct: 240 DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMF 299
Query: 688 SATLPKMLVEFARAGLSDP-TLDKI 759
SAT+P + + L++P T+D +
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLV 324
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/79 (41%), Positives = 47/79 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
ARTG+GKT F +PI++K++ N K GKN + L+L+PTRELA Q + RE L
Sbjct: 160 ARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSL 217
Query: 440 TSAAILGGESIEQQFNVMS 496
+ + GG I QQ ++
Sbjct: 218 DTICLYGGTPIGQQMRELN 236
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
A +G+S ++K + RG ++ PIQ+ + A+ G+D++ G K L
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTL 168
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++ V TPGR + + L L ++ VV DEAD++ ++GF E ++ I +LP RQ+++F
Sbjct: 228 DVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMF 287
Query: 688 SATLPKMLVEFARAGLSDP-TLDKI 759
SAT+P + + L++P T+D +
Sbjct: 288 SATMPSWIRSLTKKYLNNPLTVDLV 312
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/74 (43%), Positives = 44/74 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
ARTG+GKT F +PI++K++ N K G+N L+L+PTRELA Q + RE L
Sbjct: 148 ARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSL 205
Query: 440 TSAAILGGESIEQQ 481
+ + GG I QQ
Sbjct: 206 DTICLYGGTPIGQQ 219
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
A +G+S ++K ++ +G ++ PIQ+ + A+ G+D++ G K L
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTL 156
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 68.1 bits (159), Expect = 6e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
+N+++ TPGR + M L N++I++ DEADRL ++GF +Q+ I +RLP R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 682 LFSATLPKMLVEFARAGL 735
LFSAT + + + A+AGL
Sbjct: 203 LFSATQTQAVADLAKAGL 220
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRE-LGKFTG 436
A TGSGKT F+LP +E + N+ P + +I+SPTREL+ Q + +
Sbjct: 60 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 437 LTSAAILGGESIEQQFNVM 493
+ S ++GG +E N +
Sbjct: 120 VNSVLLVGGREVEADMNTL 138
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 150 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
LS +++ + + G++ TP+Q +TIP + KDVV G K L
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTL 68
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 505 SNIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
SN+V+ATPGR L H+ ++K +V DEADR+ E F E + +I LP +RQT
Sbjct: 212 SNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTA 271
Query: 682 LFSATLPKMLVEFARAGLSDP 744
LFSAT + + AR L+ P
Sbjct: 272 LFSATQTSKVKDLARVSLTSP 292
Score = 56.0 bits (129), Expect = 3e-08
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
ARTGSGKT F++P +E L P G + +++ PTRELA+QT EL K
Sbjct: 133 ARTGSGKTLAFLIPAVELLFKERFSPRNGTGV--IVICPTRELAIQTKNVAEELLKHHSQ 190
Query: 440 TSAAILGGESIEQQF-NVMSGS-----SPT*LLQHL 529
T + ++GG + + + SGS +P LL HL
Sbjct: 191 TVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHL 226
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVF---DEADRLFELGFGEQLQEICARLPSSRQ 675
+ IVV TPGR + I K+ N++ V F DEADR+F++GF Q+ I + RQ
Sbjct: 653 TEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQ 712
Query: 676 TLLFSATLPKMLVEFARAGLSDP 744
T+LFSAT P+ + AR L+ P
Sbjct: 713 TVLFSATFPRQVETLARKVLNKP 735
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 248 CCSMARTGSGKTACFVLPILEKLLVPNNKPTP-GKNLRALILSPTRELALQTLRFVRELG 424
C +A+TGSGKT FVLP+L + + P G L+++PTREL Q +R+
Sbjct: 569 CIGVAKTGSGKTLGFVLPMLRH--IKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 425 KFTGLTSAAILGGESIEQQFN 487
K G+ + GG + QQ +
Sbjct: 627 KPLGIRCVPVYGGSGVAQQIS 647
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 147 GLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
GL+ +L + K Y++P PIQ + +PI ++G+D + + G K L
Sbjct: 535 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTL 581
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 66.1 bits (154), Expect = 3e-11
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
N++VATPGR L H+ N+K +V DEADR+ E F E L++I LP +RQT L
Sbjct: 278 NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSL 337
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT + + AR L+ P
Sbjct: 338 FSATQSAKVEDLARVSLTSP 357
Score = 58.0 bits (134), Expect = 7e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
ARTGSGKT F++P +E L+ K TP L++ PTRELA+Q+ +EL K+
Sbjct: 198 ARTGSGKTLAFLIPAVE--LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQ 255
Query: 440 TSAAILGGESIEQQFNVMS 496
T ++GGE + + +++
Sbjct: 256 TVGKVIGGEKRKTEAEILA 274
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
F+S+ LS K I + G+ + T IQ K IP + G+DV+ G K L
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTL 206
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIV---VFDEADRLFELGFGEQLQEICARLPSSRQ 675
+ IVV TPGR + I K+ N++ V V DEADR+F++GF Q+ I + RQ
Sbjct: 520 TEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 579
Query: 676 TLLFSATLPKMLVEFARAGLSDP 744
T+LFSAT P+ + AR L+ P
Sbjct: 580 TVLFSATFPRQVETLARKVLNKP 602
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 248 CCSMARTGSGKTACFVLPILEKLLVPNNKPTP-GKNLRALILSPTRELALQTLRFVRELG 424
C +A+TGSGKT FVLP+L + + P G L+++PTREL Q +R+
Sbjct: 436 CIGVAKTGSGKTLGFVLPMLRH--IKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFS 493
Query: 425 KFTGLTSAAILGGESIEQQFN 487
K G+ + GG + QQ +
Sbjct: 494 KALGIICVPVYGGSGVAQQIS 514
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 147 GLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
GL+ +L + K Y++P PIQ + +PI ++G+D + + G K L
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTL 448
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
NI+V PGR L H+ + ++I++ DEADR+ + F QL I ++LP RQTLL
Sbjct: 195 NILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLL 254
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT K + + AR L DP
Sbjct: 255 FSATQTKKVKDLARLSLRDP 274
Score = 64.5 bits (150), Expect = 8e-11
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
ARTGSGKT FV+PILEKL + +P + +I+SPTRELA QT + ++GKF
Sbjct: 115 ARTGSGKTLAFVIPILEKL--HRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKF 172
Query: 440 TSAAILGG-ESIE------QQFNVMSGSSPT*LLQHL 529
++ ++GG E ++ + N++ +P LLQH+
Sbjct: 173 SAGLLIGGREGVDVEKERVHEMNILV-CAPGRLLQHM 208
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
++IVVATPGR I + + ++V DEADR+ ++GF Q+++I +P RQTL+
Sbjct: 558 ADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLM 617
Query: 685 FSATLPKMLVEFARAGLSDPTLDKI-RVD 768
++AT PK + + A L +P I RVD
Sbjct: 618 YTATWPKEVRKIASDLLVNPVQVNIGRVD 646
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
F+S GL +L+ + G+ PTPIQ +T PIAL +D+V + G K L
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL 487
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
++A+TGSGKT +++P L N G + LIL+PTRELA Q G+ +
Sbjct: 477 AIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTV--LILAPTRELATQIQDEALRFGRSS 534
Query: 434 GLTSAAILGG 463
++ + GG
Sbjct: 535 RISCTCLYGG 544
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/78 (41%), Positives = 49/78 (62%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
IV+ATPGR + + L + +V DEADR+ ++GF Q+++I +++ RQTLL+S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 691 ATLPKMLVEFARAGLSDP 744
AT P+ + AR L DP
Sbjct: 351 ATWPREVETLARQFLRDP 368
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPTPGKNLR--ALILSPTRELALQTLRFVRELGKF 430
+A TGSGKT ++LP L + + +P G++ LIL+PTRELA+Q R+ G
Sbjct: 208 IAETGSGKTLAYLLPALVHV---SAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLR 264
Query: 431 TGLTSAAILGG 463
+G+ S I GG
Sbjct: 265 SGVRSTCIYGG 275
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
FQ +L+ I K G+ +PTPIQ + P+AL G+D++ E G K L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/78 (41%), Positives = 49/78 (62%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
IV+ATPGR + + L + +V DEADR+ ++GF Q+++I +++ RQTLL+S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 691 ATLPKMLVEFARAGLSDP 744
AT P+ + AR L DP
Sbjct: 351 ATWPREVETLARQFLRDP 368
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPTPGKNLR--ALILSPTRELALQTLRFVRELGKF 430
+A TGSGKT ++LP L + + +P G++ LIL+PTRELA+Q R+ G
Sbjct: 208 IAETGSGKTLAYLLPALVHV---SAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLR 264
Query: 431 TGLTSAAILGG 463
+G+ S I GG
Sbjct: 265 SGVRSTCIYGG 275
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
FQ +L+ I K G+ +PTPIQ + P+AL G+D++ E G K L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/87 (37%), Positives = 48/87 (55%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++VV TPGR + L+ DNIK+ V DEAD + GF +Q+ +I LP Q +F
Sbjct: 159 HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218
Query: 688 SATLPKMLVEFARAGLSDPTLDKIRVD 768
SAT+P +E R +S P ++ D
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRD 245
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A++G+GKTA F +L++L + +AL+L+PTRELA Q + +R LG + G+
Sbjct: 83 AQSGTGKTATFCSGVLQQLDFSLIQ------CQALVLAPTRELAQQIEKVMRALGDYLGV 136
Query: 440 TSAAILGGESIEQQFNVM 493
A +GG S+ + ++
Sbjct: 137 KVHACVGGTSVREDQRIL 154
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F +MGL +L+GI G+++P+ IQ++ I G DV+Q + G K
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
++IVVATPGR I + L I +V DEADR+ ++GF Q+++I +P+ RQTL+
Sbjct: 281 ADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLM 340
Query: 685 FSATLPKMLVEFARAGLSDP 744
++AT PK + + A L +P
Sbjct: 341 YTATWPKGVRKIAADLLVNP 360
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+F++ G +L+ + G+ PTPIQ ++ PIA+ G+D+V + G K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
++A+TGSGKT +++P L N G + L+LSPTRELA Q + G+ +
Sbjct: 200 AIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTI--LVLSPTRELATQIQEEAVKFGRSS 257
Query: 434 GLTSAAILGG 463
++ + GG
Sbjct: 258 RISCTCLYGG 267
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
++IVVATPGR I + L I +V DEADR+ ++GF Q+++I +P+ RQTL+
Sbjct: 281 ADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLM 340
Query: 685 FSATLPKMLVEFARAGLSDP 744
++AT PK + + A L +P
Sbjct: 341 YTATWPKGVRKIAADLLVNP 360
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+F++ G +L+ + G+ PTPIQ ++ PIA+ G+D+V + G K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
++A+TGSGKT +++P L N G + L+LSPTRELA Q + G+ +
Sbjct: 200 AIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTI--LVLSPTRELATQIQEEAVKFGRSS 257
Query: 434 GLTSAAILGG 463
++ + GG
Sbjct: 258 RISCTCLYGG 267
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
++IVVATPGR I + L I +V DEADR+ ++GF Q+++I +P+ RQTL+
Sbjct: 281 ADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLM 340
Query: 685 FSATLPKMLVEFARAGLSDP 744
++AT PK + + A L +P
Sbjct: 341 YTATWPKGVRKIAADLLVNP 360
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+F++ G +L+ + G+ PTPIQ ++ PIA+ G+D+V + G K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
++A+TGSGKT +++P L N G + L+LSPTRELA Q + G+ +
Sbjct: 200 AIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTI--LVLSPTRELATQIQEEAVKFGRSS 257
Query: 434 GLTSAAILGG 463
++ + GG
Sbjct: 258 RISCTCLYGG 267
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 64.5 bits (150), Expect = 8e-11
Identities = 32/79 (40%), Positives = 50/79 (63%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IVVATPGR I + L + +V DEADR+ ++GF Q+++I +P+ RQTL++
Sbjct: 353 DIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMY 412
Query: 688 SATLPKMLVEFARAGLSDP 744
+AT PK + + A L +P
Sbjct: 413 TATWPKEVRKIAADLLVNP 431
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
++A+TGSGKT +++P L +N G + L+LSPTRELA Q + GK +
Sbjct: 271 AIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI--LVLSPTRELATQIQVEALKFGKSS 328
Query: 434 GLTSAAILGG 463
++ A + GG
Sbjct: 329 KISCACLYGG 338
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 186 GYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
G+ P+PIQ ++ PIA+ +D+V + G K L
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTL 281
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/87 (36%), Positives = 48/87 (55%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++VV TPGR + L+ D IK+ V DEAD + GF +Q+ +I LPS Q +F
Sbjct: 161 HVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVF 220
Query: 688 SATLPKMLVEFARAGLSDPTLDKIRVD 768
SAT+P +E R ++ P ++ D
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRD 247
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A++G+GKTA F +L++L + + +AL+L+PTRELA Q + +R LG + G+
Sbjct: 85 AQSGTGKTATFCSGVLQQLDISLVQ------CQALVLAPTRELAQQIEKVMRALGDYLGV 138
Query: 440 TSAAILGGESIEQQFNVM 493
+ A +GG S+ + V+
Sbjct: 139 KAQACVGGTSVREDQRVL 156
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F +M L +L+GI G+++P+ IQ++ I G DV+Q + G K
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGK 91
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/78 (37%), Positives = 48/78 (61%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
IV+ATPGR + + L + +V DEADR+ ++GF Q+++I + + RQTL +S
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWS 284
Query: 691 ATLPKMLVEFARAGLSDP 744
AT PK + + ++ L +P
Sbjct: 285 ATWPKEVEQLSKKFLYNP 302
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+F+ +G VL+ + K G+ +PTPIQ + P+A+ G+D++ E G K L
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTL 151
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKF 430
+A TGSGKT ++LP + + N +P G L+L+PTRELA+Q + + G
Sbjct: 142 IAETGSGKTLSYLLPAIVHV---NAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSS 198
Query: 431 TGLTSAAILGG 463
+ + + I GG
Sbjct: 199 SKIKTTCIYGG 209
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 60.9 bits (141), Expect = 1e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Frame = +1
Query: 511 IVVATPGRFL-HI--CIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
I+VATPGR HI +L +K++V DEAD L ++GF ++ I A +P RQT
Sbjct: 513 ILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTF 572
Query: 682 LFSATLPKMLVEFARAGL 735
LFSAT+P+ + + L
Sbjct: 573 LFSATVPEEVRQICHVAL 590
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLL--VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF- 430
A+TG+GKT F+LP +E ++ P ++ + + L++ PTRELA Q L K+
Sbjct: 426 AKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYH 485
Query: 431 TGLTSAAILGGESI 472
+ ++GG +
Sbjct: 486 PSIGVQVVIGGTKL 499
Score = 34.7 bits (76), Expect = 0.072
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 123 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
S F LS LK I G++ T +Q T+PI L GKDV+ + G K
Sbjct: 380 SKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGK 432
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 60.9 bits (141), Expect = 1e-09
Identities = 32/87 (36%), Positives = 47/87 (54%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++VV TPGR + L+ D IK+ V DEAD + GF +Q+ +I LP Q +F
Sbjct: 159 HVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218
Query: 688 SATLPKMLVEFARAGLSDPTLDKIRVD 768
SAT+P +E R +S P ++ D
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRD 245
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/78 (34%), Positives = 45/78 (57%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A++G+GKTA F +L++L +AL+L+PTRELA Q + +R LG + G+
Sbjct: 83 AQSGTGKTATFCSGVLQQL------DYALLQCQALVLAPTRELAQQIEKVMRALGDYQGV 136
Query: 440 TSAAILGGESIEQQFNVM 493
A +GG S+ + ++
Sbjct: 137 KVHACVGGTSVREDQRIL 154
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F +MGL +L+GI G+++P+ IQ++ I G DV+Q + G K
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGK 89
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
+++VATPGR H+ L ++K +V DEADRL F + L +I +P R+T L
Sbjct: 141 HVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFL 200
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT+ K + + RA L +P
Sbjct: 201 FSATMTKKVRKLQRACLRNP 220
Score = 55.2 bits (127), Expect = 5e-08
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLL--VPNNKPTPGKN----LRALILSPTRELALQTLRFVRE 418
+A+TGSGKT F +PIL+ LL V +++P G+ A +LSPTRELA+Q
Sbjct: 52 LAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEA 111
Query: 419 LGKFTGLTSAAILGGESIEQQFNVMSGSSP 508
LG L A ++GG QQ + G P
Sbjct: 112 LGADISLRCAVLVGGIDRMQQ-TIALGKRP 140
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F +G+ ++K + G+K P+ IQ + +P AL GKDV+ + G K
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGK 59
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Frame = +1
Query: 511 IVVATPGRFL-HI--CIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
I+VATPGR HI +L +K++V DEAD L ++GF + ++ I + +P RQT
Sbjct: 185 ILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTF 244
Query: 682 LFSATLPK 705
LFSAT+P+
Sbjct: 245 LFSATVPE 252
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLR----ALILSPTRELALQTLRFVRELGK 427
A+TG+GKT F+LP +E +V + PT N R AL++ PTRELA Q L K
Sbjct: 98 AKTGTGKTVAFLLPSIE--VVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLK 155
Query: 428 F-TGLTSAAILGG 463
+ + ++GG
Sbjct: 156 YHPSIGVQVVIGG 168
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F LS LK I GY+ T +Q T+PI L GKDV+ + G K
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGK 104
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 58.8 bits (136), Expect = 4e-09
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGK---NLRALILSPTRELALQTL 403
+D +A+TGSGKT F +P + +L N K G N L+LSPTRELA+Q
Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query: 404 RFVRELGKFTGLTSAAILGGESIEQQFNVM 493
+RE G+ GL S + GG S Q + +
Sbjct: 209 DVLREAGEPCGLKSICVYGGSSKGPQISAI 238
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IV+ TPGR + L+L ++ VV DEADR+ ++GF E ++ I + RQ ++F
Sbjct: 243 DIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMF 302
Query: 688 SATLPKMLVEFARAGLSDPTLDKI 759
SAT P + + A+ DP K+
Sbjct: 303 SATWPLDVHKLAQE-FMDPNPIKV 325
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 189 YKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+++P+PIQ T P L G+D++ + G K L
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTL 166
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 58.4 bits (135), Expect = 5e-09
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Frame = +1
Query: 511 IVVATPGRFL-HICIEMCL--KLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
I++ATPGR L HI + L +L +K+ + DEAD L +LGF +++I LP RQ+L
Sbjct: 507 ILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSL 566
Query: 682 LFSATLPK 705
LFSAT+PK
Sbjct: 567 LFSATIPK 574
Score = 37.1 bits (82), Expect = 0.013
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLR------ALILSPTRELAL 394
+D + A+TG+GK+ F+LP +E +L N GK + LIL PTRELA
Sbjct: 410 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNS---GKGVHKVAPIFVLILCPTRELAS 466
Query: 395 QTLRFVRELGK-FTGLTSAAILGG 463
Q + L K G+ ++GG
Sbjct: 467 QIAAEGKALLKNHDGIGVQTLIGG 490
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 58.4 bits (135), Expect = 5e-09
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Frame = +1
Query: 511 IVVATPGRFL-HICIEMCL--KLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
I++ATPGR L HI + L +L +K+ + DEAD L +LGF +++I LP RQ+L
Sbjct: 460 ILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSL 519
Query: 682 LFSATLPK 705
LFSAT+PK
Sbjct: 520 LFSATIPK 527
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKN----LRALILSPTRELALQT 400
+D + A+TG+GK+ F+LP +E +L N G N + ALIL PTRELA Q
Sbjct: 363 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNS-GKGVNKVAPIFALILCPTRELASQI 421
Query: 401 LRFVRELGKF-TGLTSAAILGG 463
+ L KF G+ ++GG
Sbjct: 422 AAEGKALLKFHDGIGVQTLIGG 443
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.0 bits (134), Expect = 7e-09
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKT F +P+LEK+ PNN ++A+IL PTRELALQT + +EL K+ +
Sbjct: 168 AKNGTGKTGAFCIPVLEKI-DPNNNV-----IQAMILVPTRELALQTSQVCKELSKYLNI 221
Query: 440 TSAAILGGESIEQQFNVMSGSSPT*LL 520
GG S+ ++M P LL
Sbjct: 222 QVMVTTGGTSLRD--DIMRLHQPVHLL 246
Score = 54.4 bits (125), Expect = 8e-08
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+++V TPGR L + + L + ++V DEAD+L F L+E+ LP +RQ L+F
Sbjct: 244 HLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMF 303
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P + F L P
Sbjct: 304 SATFPVTVKAFKDRHLRKP 322
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +LKGI ++G+++P+PIQ ++IPIALTG D++ + G K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.0 bits (134), Expect = 7e-09
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKT F +P+LEK+ PNN ++A+IL PTRELALQT + +EL K+ +
Sbjct: 168 AKNGTGKTGAFCIPVLEKI-DPNNNV-----IQAMILVPTRELALQTSQVCKELSKYLNI 221
Query: 440 TSAAILGGESIEQQFNVMSGSSPT*LL 520
GG S+ ++M P LL
Sbjct: 222 QVMVTTGGTSLRD--DIMRLHQPVHLL 246
Score = 54.4 bits (125), Expect = 8e-08
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+++V TPGR L + + L + ++V DEAD+L F L+E+ LP +RQ L+F
Sbjct: 244 HLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMF 303
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P + F L P
Sbjct: 304 SATFPVTVKAFKDRHLRKP 322
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +LKGI ++G+++P+PIQ ++IPIALTG D++ + G K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 57.6 bits (133), Expect = 9e-09
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEICARLPSSRQTLL 684
+IVV TPGR L + E L L N++ + DE D++ E L +QEI P +Q ++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Query: 685 FSATLPKMLVEFARAGLSDPTLDKIRVDWKLPSTL 789
FSATL K + + + DP +I VD + TL
Sbjct: 228 FSATLSKEIRPVCKKFMQDPM--EIYVDDEAKLTL 260
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTL-RFVRELGKFTG 436
A++G GKTA FVL L+++ +P+PG+ + AL+L TRELA Q FVR
Sbjct: 90 AKSGMGKTAVFVLSTLQQI-----EPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPD 143
Query: 437 LTSAAILGGESIEQQFNVMSGSSP 508
+ GG +I+ +++ P
Sbjct: 144 TKVSVFYGGVNIKIHKDLLKNECP 167
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 57.6 bits (133), Expect = 9e-09
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEICARLPSSRQTLL 684
+IVV TPGR L + E L L N++ + DE D++ E L +QEI P +Q ++
Sbjct: 85 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 144
Query: 685 FSATLPKMLVEFARAGLSDPTLDKIRVDWKLPSTL 789
FSATL K + + + DP +I VD + TL
Sbjct: 145 FSATLSKEIRPVCKKFMQDPM--EIYVDDEAKLTL 177
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTL-RFVRELGKFTG 436
A++G GKTA FVL L+++ +P+PG+ + AL+L TRELA Q FVR
Sbjct: 7 AKSGMGKTAVFVLSTLQQI-----EPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 437 LTSAAILGGESIEQQFNVMSGSSP 508
+ GG +I+ +++ P
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECP 84
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 57.6 bits (133), Expect = 9e-09
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEICARLPSSRQTLL 684
+IVV TPGR L + E L L N++ + DE D++ E L +QEI P +Q ++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Query: 685 FSATLPKMLVEFARAGLSDPTLDKIRVDWKLPSTL 789
FSATL K + + + DP +I VD + TL
Sbjct: 228 FSATLSKEIRPVCKKFMQDPM--EIYVDDEAKLTL 260
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTL-RFVRELGKFTG 436
A++G GKTA FVL L+++ +P+PG+ + AL+L TRELA Q FVR
Sbjct: 90 AKSGMGKTAVFVLSTLQQI-----EPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPD 143
Query: 437 LTSAAILGGESIEQQFNVMSGSSP 508
+ GG +I+ +++ P
Sbjct: 144 TKVSVFYGGVNIKIHKDLLKNECP 167
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 57.6 bits (133), Expect = 9e-09
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Frame = +1
Query: 511 IVVATPGRFL-HI--CIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
I+VATPGR HI +L +K++V DEAD L ++GF +++ I A +P RQT
Sbjct: 211 ILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTF 270
Query: 682 LFSATL 699
LFSAT+
Sbjct: 271 LFSATV 276
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLL--VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF- 430
A+TG+GKT F+LP +E ++ P ++ + L++ PTRELA Q L K+
Sbjct: 124 AKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYH 183
Query: 431 TGLTSAAILGGESI 472
+ ++GG +
Sbjct: 184 PSIGVQVVIGGTKL 197
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 123 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
S F LS LKGI G+K T +Q T+P+ L GKD++ + G K
Sbjct: 78 SKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGK 130
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKTA F +P+LEK+ NN ++A+I+ PTRELALQT + +ELGK +
Sbjct: 175 AKNGTGKTAAFCIPVLEKIDQDNNV------IQAVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 440 TSAAILGGESIE 475
GG S++
Sbjct: 229 QVMVTTGGTSLK 240
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+++V TPGR L + + L + ++V DEAD+L F ++ + + LP SRQ L+F
Sbjct: 251 HLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMF 310
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P + +F L++P
Sbjct: 311 SATFPVTVKDFKDRFLTNP 329
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +L GI ++G+++P+PIQ ++IPIALTG+D++ + G K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKTA F +P+LEK+ NN ++A+I+ PTRELALQT + +ELGK +
Sbjct: 175 AKNGTGKTAAFCIPVLEKIDQDNNV------IQAVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 440 TSAAILGGESIE 475
GG S++
Sbjct: 229 QVMVTTGGTSLK 240
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+++V TPGR L + + L + ++V DEAD+L F ++ + + LP SRQ L+F
Sbjct: 251 HLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMF 310
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P + +F L++P
Sbjct: 311 SATFPVTVKDFKDRFLTNP 329
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +L GI ++G+++P+PIQ ++IPIALTG+D++ + G K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKL--LVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 430
+A TGSGKTA FVLP+L + L P ++ + A++++PTRELA Q + +
Sbjct: 356 IAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHY 415
Query: 431 TGLTSAAILGGESIEQQ 481
G +I+GG+SIE+Q
Sbjct: 416 LGFRVTSIVGGQSIEEQ 432
Score = 46.8 bits (106), Expect = 2e-05
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS------- 669
IV+ATPGR + L+ VV DEADR+ ++GF Q+ + +PSS
Sbjct: 442 IVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 501
Query: 670 ----------RQTLLFSATLPKMLVEFARAGLSDPTL 750
R T +FSAT+P + AR L +P +
Sbjct: 502 EEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVV 538
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+++ L+ +LK + + GYK+P+PIQ IP+ L +DV+ E G K
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL----PSSRQ 675
+I+VATPGR + + L ++ + DEADR+ ++GF Q+++I ++ P RQ
Sbjct: 276 DILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQ 335
Query: 676 TLLFSATLPKMLVEFARAGLSD 741
T+LFSAT P+ + A LS+
Sbjct: 336 TMLFSATFPREIQRLASDFLSN 357
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTP----GKNLRALILSPTRELALQTLRFVRELGK 427
A+TGSGKTA F PI+ ++ + P G A+ILSPTRELA Q R+
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY 249
Query: 428 FTGLTSAAILGGESIEQQ 481
TG+ GG + QQ
Sbjct: 250 QTGVKVVVAYGGTPVNQQ 267
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F + L + I + Y +PTP+QR IPI G+D++ + G K
Sbjct: 148 FAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGK 196
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+++V TPGR L + + L + ++V DEAD+L + F ++E+ LP SRQ L+F
Sbjct: 274 HLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMF 333
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P + F L P
Sbjct: 334 SATFPVTVKSFKDRYLKKP 352
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/71 (42%), Positives = 42/71 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKT F +P LEK+ NN ++A+IL PTRELALQT + +EL K+ +
Sbjct: 198 AKNGTGKTGAFCIPTLEKIDPENNV------IQAVILVPTRELALQTSQVCKELSKYLKI 251
Query: 440 TSAAILGGESI 472
GG S+
Sbjct: 252 EVMVTTGGTSL 262
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +L+GI ++G+++P+PIQ ++IPIALTG D++ + G K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/78 (43%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLL----VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGK 427
ARTG GKT FVLPILE L+ K G++ L+L PTRELA Q G
Sbjct: 140 ARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGG 199
Query: 428 FTGLTSAAILGGESIEQQ 481
GL+S + GG+S Q
Sbjct: 200 SLGLSSCCLYGGDSYPVQ 217
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR--QTL 681
+IVV TPGR L ++ V DEAD + +GF E ++ I ++ S QTL
Sbjct: 226 DIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTL 285
Query: 682 LFSATLP 702
LFSATLP
Sbjct: 286 LFSATLP 292
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/87 (29%), Positives = 46/87 (52%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++V TPGR + L+ IK+++ DE+D + GF +Q+ ++ LP Q L
Sbjct: 155 HVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLV 214
Query: 688 SATLPKMLVEFARAGLSDPTLDKIRVD 768
SATLP ++E +++P ++ D
Sbjct: 215 SATLPHEILEMTSKFMTEPVKILVKRD 241
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+ A++G+GKT+ L + + + T + ++ALILSPTRELA QT + ++ +G
Sbjct: 77 AQAQSGTGKTSMIALSVCQVV------DTSSREVQALILSPTRELATQTEKTIQAIGLHA 130
Query: 434 GLTSAAILGGESI 472
+ + A +GG S+
Sbjct: 131 NIQAHACIGGNSV 143
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F MG+ VL+G+ + G+++P+ IQ++ + L G+DV+ + G K
Sbjct: 36 SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGK 85
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Frame = +1
Query: 508 NIVVATPGRF---LHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQT 678
+IV+ TPGR L ++ K +V DEADR+ ++GF ++L+ I LP SRQT
Sbjct: 178 HIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQT 237
Query: 679 LLFSATLPKML 711
LLFSAT+ L
Sbjct: 238 LLFSATMTSNL 248
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTG 436
+A+TGSGKTA F LPIL +L P + AL+++PTRELA Q + LG
Sbjct: 101 LAQTGSGKTAAFALPILHRLA---EDP---YGVFALVVTPTRELAFQLAEQFKALGSCLN 154
Query: 437 LTSAAILGG-ESIEQQFNVMS 496
L + I+GG + + Q +++S
Sbjct: 155 LRCSVIVGGMDMLTQTMSLVS 175
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 123 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
S+ F+ +GL+ ++ + G ++PTP+Q +P L G+DV+ + G K
Sbjct: 56 SATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGK 108
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP----SSRQ 675
+I+VATPGR + + + I+ + DEADR+ ++GF Q+++I ++ RQ
Sbjct: 289 DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 348
Query: 676 TLLFSATLPKMLVEFA 723
TLLFSAT P+ + A
Sbjct: 349 TLLFSATFPREIQRLA 364
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNN--KPTPGKNLR--ALILSPTRELALQTLRFVRELGK 427
A+TGSGKTA F PI+ ++ + +P + + A+ILSPTRELA Q ++
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSY 262
Query: 428 FTGLTSAAILGGESIEQQ 481
TG+ GG I QQ
Sbjct: 263 QTGVKVVVAYGGTPINQQ 280
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F + L + I + Y +PTP+QR IPI L G+D++ + G K
Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGK 209
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP----SSRQ 675
+I+VATPGR + + + I+ + DEADR+ ++GF Q+++I ++ RQ
Sbjct: 281 DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 340
Query: 676 TLLFSATLPKMLVEFARAGLSD 741
T+LFSAT P + A +S+
Sbjct: 341 TMLFSATFPSQIQRLAADFMSN 362
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLR----ALILSPTRELALQTLRFVRELGK 427
A+TGSGKTA F PI+ ++ + P + A+ILSPTRELA Q ++
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 428 FTGLTSAAILGGESIEQQ 481
TG+ GG I QQ
Sbjct: 255 QTGVKVVVAYGGTPIHQQ 272
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F + L + I + Y +PTP+QR IPI L +D++ + G K
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP----SSRQ 675
+I+VATPGR + + + I+ + DEADR+ ++GF Q+++I ++ RQ
Sbjct: 281 DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 340
Query: 676 TLLFSATLPKMLVEFARAGLSD 741
T+LFSAT P + A +S+
Sbjct: 341 TMLFSATFPSQIQRLAADFMSN 362
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLR----ALILSPTRELALQTLRFVRELGK 427
A+TGSGKTA F PI+ ++ + P + A+ILSPTRELA Q ++
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 428 FTGLTSAAILGGESIEQQ 481
TG+ GG I QQ
Sbjct: 255 QTGVKVVVAYGGTPIHQQ 272
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F + L + I + Y +PTP+QR IPI L +D++ + G K
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +1
Query: 514 VVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSA 693
V TPGR + L+ +K++V DE+D + G +Q+ ++ LP Q L SA
Sbjct: 144 VSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISA 203
Query: 694 TLPKMLVEFARAGLSDPTLDKIRVD 768
TLP+ ++E ++DP ++ D
Sbjct: 204 TLPQEILEMTEKFMTDPVRILVKPD 228
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 46/73 (63%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+ A++G+GKT+ + + + + + + K ++ L+LSP+RELA QT + ++ +G T
Sbjct: 64 AQAQSGTGKTSMIAISVCQIVNISSRK------VQVLVLSPSRELASQTEKTIQAIGAHT 117
Query: 434 GLTSAAILGGESI 472
+ + A +GG+SI
Sbjct: 118 NIQAHACIGGKSI 130
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F MG++ VL+G+ GYK+P+ IQ++ + L G+DV+ + G K
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK 72
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/64 (42%), Positives = 41/64 (64%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+ A GSGKT CFVL +L ++ +P +AL + PTRELA Q + ++++GKFT
Sbjct: 136 AQAHNGSGKTTCFVLGMLSRVDPTLREP------QALCICPTRELANQNMEVLQKMGKFT 189
Query: 434 GLTS 445
G+T+
Sbjct: 190 GITA 193
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFEL-GFGE---QLQEICARLPSSR 672
+++V+ TPG L L+++KI+VFDEAD + GF + ++ + R+ +
Sbjct: 215 AHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNF 274
Query: 673 QTLLFSATLPKMLVEFARAGLSDP 744
Q LLFSAT + + +F + DP
Sbjct: 275 QVLLFSATFNETVKDFVARTVKDP 298
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 51.2 bits (117), Expect = 8e-07
Identities = 25/65 (38%), Positives = 40/65 (61%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
+++ TPGR + + + ++LDNI V DE D + + GF +Q+ +I L S Q LLFS
Sbjct: 239 LIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFS 297
Query: 691 ATLPK 705
AT+ +
Sbjct: 298 ATISR 302
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNK-PTPGK-NLRALILSPTRELALQTLRFVRELGKFT 433
A TGSGKTA F++PI+ + +++ P+ + N A++L+PTREL +Q + LGK
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 213
Query: 434 GLTSAAILGGESIE-QQFNVMSG 499
+A ++GG+ + Q + + G
Sbjct: 214 PFKTALVVGGDPMSGQLYRIQQG 236
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F S GL +L + GY PTPIQ + IP ALTGK ++ + G K
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGK 160
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 51.2 bits (117), Expect = 8e-07
Identities = 25/65 (38%), Positives = 40/65 (61%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
+++ TPGR + + + ++LDNI V DE D + + GF +Q+ +I L S Q LLFS
Sbjct: 102 LIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFS 160
Query: 691 ATLPK 705
AT+ +
Sbjct: 161 ATISR 165
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNK-PTPGK-NLRALILSPTRELALQTLRFVRELGKFT 433
A TGSGKTA F++PI+ + +++ P+ + N A++L+PTREL +Q + LGK
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 76
Query: 434 GLTSAAILGGESIE-QQFNVMSG 499
+A ++GG+ + Q + + G
Sbjct: 77 PFKTALVVGGDPMSGQLYRIQQG 99
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 17/98 (17%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS------ 666
+I++ATPGR L H+ N++ V+FDEAD + ELG+G+++++I L S
Sbjct: 157 SILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQG 216
Query: 667 ----------SRQTLLFSATLPKMLVEFARAGLSDPTL 750
+Q LL SATL + + A+ L DP +
Sbjct: 217 EEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVM 254
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRE-LGKFTG 436
A TG+GKT ++ P++ L + K AL++ PTREL LQ + + L +F
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHW 133
Query: 437 LTSAAILGGE 466
+ ++GGE
Sbjct: 134 IVPGYVMGGE 143
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 SSGAFQSMGLSFPVLKGITKR-GYKQPTPIQRKTIPIALTGKDVV 254
+S +F S+GL + + +R G++ PT +Q + IP+ L+G+DV+
Sbjct: 27 ASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVL 71
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/60 (51%), Positives = 39/60 (65%)
Frame = +2
Query: 248 CCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGK 427
C + A TGSGKT F+ P+L KL P+ T G +RA+ILSP RELA QT R ++L K
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPS---TDG--IRAVILSPARELAAQTAREGKKLIK 235
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +1
Query: 499 LFSNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQ---EICARLPSS 669
L+ +++++TP R + L ++ +V DE+D+LFE +Q+ + C+ PS
Sbjct: 257 LWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSN-PSI 315
Query: 670 RQTLLFSATLPKMLVEFARAGLSD 741
++ LFSATLP + E AR+ + D
Sbjct: 316 IRS-LFSATLPDSVEELARSIMHD 338
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/29 (48%), Positives = 24/29 (82%)
Frame = +3
Query: 162 VLKGITKRGYKQPTPIQRKTIPIALTGKD 248
+L+ + + G+K+PTPIQR+ IPI L+G++
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRE 180
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 47.6 bits (108), Expect = 9e-06
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNK-----PTPGKN---------LRALILSPTRELALQ 397
A TGSGKT F LPIL++LL K G+ LRALI++PTRELALQ
Sbjct: 235 AETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQ 294
Query: 398 TLRFVRELGKFTGLTSAAILGGESIEQQ 481
+ K + I+GG E+Q
Sbjct: 295 VTEHLENAAKNLSVKVVPIVGGMFSEKQ 322
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 511 IVVATPGRFLHICI---EMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP 663
IVVATPGR + + ++L ++ V DEADR+ E G +LQ I LP
Sbjct: 332 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLP 385
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLF-ELGFGEQLQEICARLPSSRQTLL 684
++++ATPGRF ++ E L L N++ + DE D LF + F LQ + P + Q L
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563
Query: 685 FSATLP 702
+ATLP
Sbjct: 564 VTATLP 569
Score = 46.0 bits (104), Expect = 3e-05
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKL----LVPNNKPTPGKNLRALILSPTRELALQT 400
ID + C ++GSGKT +++P++++L L ++K +PG R ++L PT ELA Q
Sbjct: 409 IDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCP-RVIVLVPTAELASQV 467
Query: 401 LRFVRELGKF-TGLTSAAILGG-------ESIEQQFNVMSGS-SPT*LLQHLGASYTSAL 553
L R + K S + GG E++EQ +V+ + L + G S L
Sbjct: 468 LANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNL 527
Query: 554 RCA 562
RCA
Sbjct: 528 RCA 530
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPN---NKPTPGKNLRALILSPTRELALQTL 403
++R+ + TGSGKT ++LPI++ + K T + R ++L PTREL+ Q
Sbjct: 147 MERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVY 206
Query: 404 RFVRELGKFTGLTSAAILGGESIEQQFNVMSGS------SPT*LLQHL 529
R + + S + GG I Q + ++ + +P +LQH+
Sbjct: 207 RVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHI 254
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 660
++VV TPGR L E + +I +V DEAD +F+ GFG ++++ A L
Sbjct: 241 DMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPL 291
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+F+ +GL +++ +TK+G ++PT IQ+ IP L GKDVV + G K L
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTL 98
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL 421
A+TGSGKT ++LP+L+KL ++ A IL P+REL Q V L
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 571 DNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFARAGLSDP 744
+++ I+V DEAD L G+ + L+ + + +P Q LL SAT + + + L +P
Sbjct: 199 ESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNP 256
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = +2
Query: 251 CSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 430
C + TGSGKT + LPI++ L P + LRAL++ PTR+LALQ +
Sbjct: 66 CVNSPTGSGKTLSYALPIVQLLA-----SRPVRCLRALVVLPTRDLALQVKDVFDAIAPA 120
Query: 431 TGLTSAAILGGESI 472
GL+ + +G SI
Sbjct: 121 VGLSVGSAVGQSSI 134
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Frame = +2
Query: 266 TGSGKTACFVLPILEKL--LVPNNKPTPGKN-----LRALILSPTRELALQTLRFVRE-L 421
TGSGKT ++LPIL ++ L ++ + +N ++A+I++P+REL +Q +R V + L
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
Query: 422 GKFTGLTSAAILGGESIEQQFNVMSGSSP 508
G ++GG + +Q + + P
Sbjct: 216 GPVHRRMVQQLVGGANRMRQEEALKKNKP 244
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL---------- 660
IVV TPGR I L + +V DE D L F E + I +
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKG 305
Query: 661 ----PSSRQTLLFSATLPKMLVEFARAGLSDPTL 750
++RQT+L SAT+P ++ A++ +P L
Sbjct: 306 EVDERANRQTILVSATVPFSVIRAAKSWSHEPVL 339
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +2
Query: 248 CCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELG- 424
C A+TGSGKT ++L ++ L+ P +++A+I+ PTREL +Q + R L
Sbjct: 116 CILHAQTGSGKTLTYLL-LIFSLINPQR-----SSVQAVIVVPTRELGMQVTKVARMLAA 169
Query: 425 ----KFTGLTSAAILGGESIEQQFNVMSGSSPT*LL 520
G T A+L G ++ + + + P L+
Sbjct: 170 KSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILV 205
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 162 VLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+L + + G+ PT IQR+ +P TG+D + + G K L
Sbjct: 87 ILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTL 128
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+++S+GLS V + G+ +P+ Q IP L+GKDV+ E G K
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGK 130
Score = 33.5 bits (73), Expect = 0.17
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLL-------VPN--NKPTPGKNLRALILSPTRELALQTLRFV 412
A TGSGKT ++ PI+++L V N +P P KN+ +LIL P L Q +R V
Sbjct: 124 AETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNI-SLILCPNVMLCEQVVRMV 182
Query: 413 RELGKFTG---LTSAAILGGESIEQQFNVMSGSSPT*LLQHL 529
L G L A+ G + + + S+P LL ++
Sbjct: 183 NGLVDEDGNPLLRVEAVCGSQGWPDRLPDIIVSTPAALLNNI 224
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
putative
Length = 2172
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLR-FVRELGKFTG 436
A TGSGKT C IL N+ P +R + ++P +A + R + ++ GK G
Sbjct: 1374 APTGSGKTICAEFAILR-----NHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLG 1428
Query: 437 LTSAAILG 460
L + G
Sbjct: 1429 LRVVELTG 1436
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKL---LVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 430
A TG+GKT VL IL +L + P G N + + ++P + L + + + + K
Sbjct: 528 APTGAGKTNVAVLTILHQLGLNMNPGGTFNHG-NYKIVYVAPMKALVAEVVDSLSQRLKD 586
Query: 431 TGLTSAAILGGESIEQQ 481
G+T + G +S+ Q
Sbjct: 587 FGVTVKELSGDQSLTGQ 603
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLR-FVRELGKFTG 436
A TGSGKT C IL N+ P +R + ++P +A + R + + GK G
Sbjct: 1373 APTGSGKTICAEFAILR-----NHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLG 1427
Query: 437 LTSAAILGGESIE 475
L + G +++
Sbjct: 1428 LRVVELTGETALD 1440
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 248 CCSMARTGSGKTACFVLPIL 307
C +A TGSGK+ CF +P L
Sbjct: 186 CLVLAATGSGKSLCFQIPAL 205
>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
putative very strong similarity to PIF3 like basic Helix
Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
GI:22535494
Length = 346
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 489 TLNCCSMDSPPRIAALVNPVNFPSSLTNLN 400
T NC PP AA N + P+SL+NL+
Sbjct: 304 TENCSPQSVPPSCAAFPNQIPNPNSLSNLD 333
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 574 NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFA 723
+I+ V+FDE + ++ G +E+ LP +L SAT+P EFA
Sbjct: 456 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTF-EFA 504
>At3g22160.1 68416.m02797 VQ motif-containing protein contains
PF05678: VQ motif
Length = 192
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 332 KPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPT 511
KPT ++ RA +PT L T F + ++TG SA G + F++ S S P+
Sbjct: 52 KPTRRRS-RASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDPS 110
>At1g08100.1 68414.m00886 high-affinity nitrate transporter (ACH2)
identical to high-affinity nitrate transporter ACH2
[Arabidopsis thaliana] GI:3608364
Length = 522
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 239 GQCYWYGLTLYRCWLFV 189
G+ WY +T YR W+FV
Sbjct: 267 GKILWYAVTNYRTWIFV 283
>At1g08090.1 68414.m00885 high-affinity nitrate transporter (ACH1)
identical to trans-membrane nitrate transporter protein
AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 530
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 239 GQCYWYGLTLYRCWLFV 189
G+ WY +T YR W+FV
Sbjct: 269 GKILWYAVTNYRTWIFV 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,288,870
Number of Sequences: 28952
Number of extensions: 294248
Number of successful extensions: 936
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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