Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021044
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 113 1e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 105 2e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 105 2e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 81 8e-16
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 81 1e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 80 2e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 77 1e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 75 5e-14
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 69 3e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 63 2e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 62 3e-10
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 62 5e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 61 9e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 61 9e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 58 6e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 3e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 55 4e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 54 1e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 53 2e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 50 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 7e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 48 7e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 7e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 3e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 4e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 5e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 6e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 8e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 4e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 41 8e-04
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 41 8e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 0.001
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 40 0.002
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.012
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 37 0.017
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 37 0.017
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.017
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.067
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.12
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 33 0.20
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.20
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 32 0.36
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 3.3
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 3.3
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 3.3
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 29 3.3
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.8
At2g33420.1 68415.m04096 expressed protein 28 5.8
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.7
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 28 7.7
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 113 bits (272), Expect = 1e-25
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 703 TCVFGGAPKREQARDLE 753
TC++GG PK Q RDL+
Sbjct: 204 TCIYGGVPKGPQVRDLQ 220
Score = 97.5 bits (232), Expect = 8e-21
Identities = 45/92 (48%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +3
Query: 237 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANF 413
SPR L L PF KNFY P V + EVEEYR E+TV G ++ ++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
PDYV + VK G+ EPTPIQ+QGWP+AM G++
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRD 138
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 105 bits (253), Expect = 2e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 703 TCVFGGAPKREQARDL 750
TC++GGAPK Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/90 (41%), Positives = 58/90 (64%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR +++V G +V ++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 105 bits (253), Expect = 2e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 703 TCVFGGAPKREQARDL 750
TC++GGAPK Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/90 (41%), Positives = 58/90 (64%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR +++V G +V ++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 703 TCVFGGAPKREQARDLE 753
TC++GGAPK Q RDLE
Sbjct: 262 TCLYGGAPKGPQLRDLE 278
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V + FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA 518
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 703 TCVFGGAPKREQARDLE 753
TC++GGAPK Q RDLE
Sbjct: 262 TCLYGGAPKGPQLRDLE 278
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V + FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA 518
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 703 TCVFGGAPKREQARDLE 753
TC++GGAPK Q RDLE
Sbjct: 262 TCLYGGAPKGPQLRDLE 278
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V + FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA 518
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 703 TCVFGGAPKREQARDLE 753
+ V+GG K EQ ++L+
Sbjct: 333 SAVYGGMSKHEQFKELK 349
Score = 68.1 bits (159), Expect = 6e-12
Identities = 27/85 (31%), Positives = 47/85 (55%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQG 434
+ +P NK+FY+ ++ + E +YR + VSG +VH ++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN 509
+K Y++PT IQ Q PI +SG++
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRD 267
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 703 TCVFGGAPKREQARDLE 753
V+GG+ +Q +L+
Sbjct: 634 VPVYGGSGVAQQISELK 650
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + EV YR E+ V G +V I+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN 509
+K + Y++P PIQ Q PI MSG++
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRD 568
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 703 TCVFGGAPKREQARDLE 753
TC++GGAPK Q ++LE
Sbjct: 539 TCLYGGAPKGPQLKELE 555
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +3
Query: 273 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVK 440
NK+ PH P V SP E+ YR HEVT +G + FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 441 TMGYKEPTPIQAQGWPIAMSGKN*LA 518
+ G+ PTPIQAQ WPIA+ ++ +A
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 77.4 bits (182), Expect = 1e-14
Identities = 36/77 (46%), Positives = 49/77 (63%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
Query: 703 TCVFGGAPKREQARDLE 753
V+GG+ +Q +L+
Sbjct: 501 VPVYGGSGVAQQISELK 517
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + V YR E+ V G +V IQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN 509
+K + Y++P PIQAQ PI MSG++
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRD 435
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 74.9 bits (176), Expect = 5e-14
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 703 TCVFGGAPKREQARDLE 753
C++GGAPK Q +++E
Sbjct: 333 ACLYGGAPKGPQLKEIE 349
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V + G+ P+PIQAQ WPIAM ++ +A
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNSIQYFEEANFPD 419
E Y HE+TVSG +V + FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 693
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 694 VRNTCVFGGAPKREQ 738
R T + GG EQ
Sbjct: 418 FRVTSIVGGQSIEEQ 432
Score = 35.1 bits (77), Expect = 0.050
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +3
Query: 336 YRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+R + ++ G + ++ +EE+ + + V+ GYK+P+PIQ P+ + ++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRD 352
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 687
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 688 SYVRNTCVFGGAPKREQARDLE 753
+ V+ +GG P +Q R+LE
Sbjct: 264 TGVKVVVAYGGTPINQQLRELE 285
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +3
Query: 261 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGV 437
+ PF + +P P ++ + + + + SG V + F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+ Y +PTP+Q PI + G++ +A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 687
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 688 SYVRNTCVFGGAPKREQARDLE 753
+ V+ +GG P +Q R+LE
Sbjct: 251 TGVKVVVAYGGTPVNQQIRELE 272
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 267 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKT 443
PF N DP + + E Y + + SG V + F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA 518
Y +PTP+Q PI +G++ +A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 690
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 691 YVRNTCVFGGAPKREQ 738
+++ CV+GG+ K Q
Sbjct: 219 GLKSICVYGGSSKGPQ 234
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEV--HNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 497
E E + VT GVE + +++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 498 SGKN 509
G++
Sbjct: 150 DGRD 153
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 9e-10
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 687
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 688 SYVRNTCVFGGAPKREQARDLE 753
+ V+ +GG P +Q R+LE
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELE 277
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 354 VTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V SG +V + F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 9e-10
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 687
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 688 SYVRNTCVFGGAPKREQARDLE 753
+ V+ +GG P +Q R+LE
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELE 277
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 354 VTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V SG +V + F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 58.0 bits (134), Expect = 6e-09
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 693
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 694 VRNT-CVFGGAPKREQARDLE 753
+T C++GG P +Q R L+
Sbjct: 204 SLDTICLYGGTPIGQQMRQLD 224
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 56.0 bits (129), Expect = 3e-08
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 693
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 694 VRNT-CVFGGAPKREQARDL 750
+T C++GG P +Q R+L
Sbjct: 216 SLDTICLYGGTPIGQQMREL 235
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 684
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 685 TSY--VRNTCVFGGAPKREQ 738
Y +R+ GG R Q
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQ 222
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/87 (29%), Positives = 46/87 (52%)
Frame = +3
Query: 249 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQ 428
G +P + ++ P V K S +++ R +TV+G ++ I+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ +K G PTPIQ QG P+ +SG++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRD 136
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +1
Query: 520 TQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 684
+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 685 TSYVRNTCVFGGAPKREQARDL 750
+ R+ V GG+ R Q L
Sbjct: 215 HARFRSILVSGGSRIRPQEDSL 236
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 699
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 700 NTCVFGGAPK-REQAR 744
V GG K +E+AR
Sbjct: 136 PGYVMGGEKKAKEKAR 151
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN 509
MG++ PT +QAQ P+ +SG++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRD 69
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 681
R +TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 682 HTSYVRNTCVFGG 720
+ + + C++GG
Sbjct: 199 GSLGLSSCCLYGG 211
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 678
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPT 464
+ P + K S + + R + V+G ++ I+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 465 PIQAQGWPIAMSGKN 509
PIQ QG P+ ++G++
Sbjct: 171 PIQVQGLPVILAGRD 185
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 681
R +TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 682 HTSYVRNTCVFGG 720
Y+ CV+GG
Sbjct: 203 SAPYLSTVCVYGG 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 697 RNTCVFGGAPKREQ 738
+ V GG P Q
Sbjct: 216 KTALVVGGDPMSGQ 229
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 315 SPYEVEEYRNNHEVTVSGV--EVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 488
S ++ + R ++ V G V + F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 489 IAMSGKN*LA 518
A++GK+ LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 697 RNTCVFGGAPKREQ 738
+ V GG P Q
Sbjct: 79 KTALVVGGDPMSGQ 92
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/76 (34%), Positives = 45/76 (59%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129
Query: 703 TCVFGGAPKREQARDL 750
+ + GG +Q +L
Sbjct: 130 SLLVGGDSMEDQFEEL 145
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/85 (36%), Positives = 43/85 (50%)
Frame = +1
Query: 484 GR*LCLERISWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 663
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 664 VAADFGHTSYVRNTCVFGGAPKREQ 738
+ + + ++ + GG REQ
Sbjct: 257 MIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 357 TVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++
Sbjct: 158 TVDGVSFHADT--FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRD 206
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 693
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 694 VRNTCVFGGAPKREQARDLE 753
V + + GG LE
Sbjct: 120 VNSVLLVGGREVEADMNTLE 139
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 523 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 699
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQT 191
Query: 700 NTCVFGGAPKREQAR 744
+ V GG +R +A+
Sbjct: 192 VSMVIGGNNRRSEAQ 206
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 654
+ +TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 657
R +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
EVEE RN+ E E + + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKE-EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 504 KN*LA 518
K+ +A
Sbjct: 84 KDVVA 88
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.4 bits (100), Expect = 8e-05
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 703 TCVFGGAPKREQARDL 750
+ + GG Q L
Sbjct: 158 SVIVGGMDMLTQTMSL 173
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 690
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 691 Y-VRNTCVFGGAPKREQARDLE 753
R+ V GG +R Q +LE
Sbjct: 479 VPFRSMVVTGGFRQRTQLENLE 500
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 654
+ +TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 654
+ +TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 669
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +1
Query: 502 ERISWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF- 678
E + +TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 192 EDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELL 250
Query: 679 -GHTSYVRNTCVFGGAPKREQARDL 750
H+ V V GG ++ +A L
Sbjct: 251 KYHSQTVGK--VIGGEKRKTEAEIL 273
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +3
Query: 264 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNSIQYFEEANFPDYVQQGVKT 443
+P K T K EVE+ ++ + + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 444 MGYKEPTPIQAQGWPIAMSGKN 509
MG+ T IQA+ P M G++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGED 193
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 693
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 694 VRNTCVFGGAPKREQARDLE 753
V + + GG + + +E
Sbjct: 120 VNSVLLVGGREVKADMKIIE 139
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +1
Query: 616 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQ 157
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +1
Query: 616 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQ 155
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 493 LCLERISWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 654
LC I +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +1
Query: 616 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 155
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 657
+ +TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNSIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
R + + VSG + ++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 654
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 681
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 682 HTSYVRNTCVFGGAPKREQ 738
+R + GG + +Q
Sbjct: 114 ADISLRCAVLVGGIDRMQQ 132
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 372 EVHNSIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKD 48
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 666
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 697 RNTCVFGGAPKRE 735
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
FE+ + G+ G++ P+PIQ + PIA++G++ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 697 RNTCVFGGAPKRE 735
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
FE+ + G+ G++ P+PIQ + PIA++G++ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 657
+ +TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 669
QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 697 RNTCVFGGAPKRE 735
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
FE+ + +G+ G+++P+PIQ + PIA++G + LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 697 RNTCVFGGAPKRE 735
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
FE+ + +G+ G+++P+PIQ + PIA++G + LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
R + G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 697 RNTCVFGGAPKRE 735
GG R+
Sbjct: 252 EVMVTTGGTSLRD 264
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
FE+ + +G+ G+++P+PIQ + PIA++G + LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.067
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 681
+ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVA 669
++ TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE 212
Query: 670 ADFGHTSYVRNTCVFGGAPKREQARDLE 753
G + GGA + Q L+
Sbjct: 213 KLLGPVHRRMVQQLVGGANRMRQEEALK 240
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 384 SIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
S + FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 108 SAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 616 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLE 753
AL+L+PTRELA Q ++ G H + + C+ GG E R LE
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLE 151
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +1
Query: 517 RTQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 687
+ Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 688 SYVRNTCVFGGAPKREQARDLE 753
+ + C+ GG E + LE
Sbjct: 118 NIQAHACI-GGKSIGEDIKKLE 138
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYSNGFRQNVGLHLASH 566
I+ F++ D V +GV GYK+P+ IQ + + G++ +A + + S
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 567 C 569
C
Sbjct: 81 C 81
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 32.3 bits (70), Expect = 0.36
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 657
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 658 QQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
+ + V+ + GG +Q R L+
Sbjct: 296 TEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 657
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 657
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 517 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 657
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 422 CATRCKDNGLQRTDAYSSSRLADSYVWKELVGVLKR 529
C T + GL+ + Y ++RLA S V KEL+ + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 656 ICCANSLVGAKTKAIGPSPLRI 591
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 18 SKRIHSLNKHLQLNPKI 68
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNSIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 400 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCLERISWRTQTGSGKTLAYILPA 564
K ++F C K Q+ + +FK++ G + + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 18 SKRIHSLNKHLQLNPKI 68
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,683
Number of Sequences: 28952
Number of extensions: 328822
Number of successful extensions: 1103
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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