Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021043
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FXP7 Cluster: Nodulin, putative; n=1; Trichomonas vag...    36   0.99 
UniRef50_UPI000023CBFD Cluster: hypothetical protein FG05603.1; ...    34   3.0  

>UniRef50_A2FXP7 Cluster: Nodulin, putative; n=1; Trichomonas
           vaginalis G3|Rep: Nodulin, putative - Trichomonas
           vaginalis G3
          Length = 249

 Score = 35.9 bits (79), Expect = 0.99
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 434 PPQKIRYNPPHGPPMVYPVYHGTPPP 511
           PP  I Y  PH PP+  PV  G PPP
Sbjct: 50  PPYGINYMIPHSPPIQNPVLRGPPPP 75


>UniRef50_UPI000023CBFD Cluster: hypothetical protein FG05603.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG05603.1 - Gibberella zeae PH-1
          Length = 599

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 434 PPQKIRYNPPHGPPMVYPVYHGTPPP 511
           PP +    PP+G P  YP Y G PPP
Sbjct: 127 PPSQYPQQPPYGAPQAYP-YQGPPPP 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,585,692
Number of Sequences: 1657284
Number of extensions: 13754942
Number of successful extensions: 45222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45067
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)