Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021043
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.0  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.0  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.5  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   4.7  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    25   8.1  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +2

Query: 437 PQKIRYNP---PHGPPMVYPVYHGTP 505
           P  ++Y P   P   P  YPVYH TP
Sbjct: 405 PNMVQYGPILQPGYVPQYYPVYHQTP 430


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -2

Query: 455 CILFFAGDCSDNGCVSWYGSLMDSYVLLKTGNRGYYSLYCHDQTC 321
           C+ FF+ +C    C++ Y   +DS +     + G   + C +++C
Sbjct: 139 CLPFFSAECDHEFCLACYRQYLDSRI-----SEGESVIQCPEESC 178


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 97  NVTSKXFGGGSRHSYPKSGGFLVTADCQVRADTDIHLLAAYLVMAILEV-VTATIFW 264
           ++ SK    GSR +YP S G   ++ C +  +T+  +  A  V + ++V  T   FW
Sbjct: 250 SIISKVSSYGSRQTYPPS-GIDDSSYCSMFVETEFIVEIAQTVFSFVQVRGTVPCFW 305


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 217 YLVMAILEVVTATIFWRL-VWSWQH 288
           YL++ IL  +T T+ WR+ V++ +H
Sbjct: 712 YLLIGILAAITGTVVWRIRVYAKKH 736


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 RRT*LSINDPYHDTQPLSLQSPAKNKIQSA 462
           R+  L + +P+  T P+S  +PA N  +SA
Sbjct: 213 RKLNLPLREPHGSTGPMSTPTPALNSSRSA 242


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 455 NPPHGPPMVYPVYHG 499
           N  HGPPMV+P   G
Sbjct: 289 NADHGPPMVFPAPFG 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,358
Number of Sequences: 5004
Number of extensions: 54662
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)