Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021043
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 31 0.91
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 30 2.1
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 30 2.1
07_01_0479 + 3606663-3607448 29 3.7
07_01_0080 + 587674-588510 29 3.7
03_05_0639 - 26323328-26323630,26323962-26324057,26324458-263247... 29 3.7
02_01_0302 - 2021221-2023305 29 3.7
11_01_0359 - 2731522-2732346 29 4.8
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 29 4.8
07_03_0600 + 19866757-19867218,19867920-19868429 28 6.4
05_03_0228 - 10662930-10663417,10663482-10663632 28 6.4
05_01_0142 - 940421-940701,941262-941574 28 6.4
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 28 6.4
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 28 8.5
11_06_0092 + 19973364-19975983,19976272-19976648 28 8.5
08_01_0793 - 7685702-7686955 28 8.5
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 8.5
02_03_0114 + 15410368-15410760,15412301-15412342 28 8.5
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 31.1 bits (67), Expect = 0.91
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 455 CILFFAGDCSDNGCVSWYGSLMD 387
C+ + A D S GCV W G ++D
Sbjct: 395 CVAYAAADISGRGCVMWIGDMVD 417
>11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 529 FAPGKRRRRGSVVNWVDHWWAVGRIVSYF 443
+ P +RRRRG + W H A G I YF
Sbjct: 970 YIPRRRRRRGRFIKWSLHKDACGLICRYF 998
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -3
Query: 481 DHWWAVGRIVSYFLRGTVVIMVVYRGMGR*W--IAMSS*RRVTVATTPCIAMTRH 323
DHW A+ R++ Y L+GT+ + + Y G+ R W I + + + + + P + M+ H
Sbjct: 601 DHWRALERVMRY-LKGTMELGLHYIGILRYWRVIVILTGSLMWMRSKPLVDMSSH 654
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 434 PPQKIRYNPPHGPPMVYPVYHGTPPP 511
P +R PP GPP V P G PPP
Sbjct: 205 PGPFMRGPPPMGPPQVRPGMPGGPPP 230
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 434 PPQKIRYNPPHGPPMVYPVYHGTPPPTFTRR 526
PP +PP PP P PPP FTRR
Sbjct: 96 PPPPSSGSPPPPPPPPPPPPPPPPPPLFTRR 126
>03_05_0639 -
26323328-26323630,26323962-26324057,26324458-26324730,
26325266-26325398,26325507-26325553
Length = 283
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 261 EDGSRDYFQYCHDQIGRQKMDIRVRPN 181
+D +DY YC D+IG ++D +P+
Sbjct: 95 KDNGKDYIVYCADEIGPSQLDNAPQPS 121
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +2
Query: 431 SPPQKIRYNPPHGPPMVYPVYHGTPPPTFTRRKTLEANTERF*PD*RF 574
SPP P H PP P + P P T + +R PD RF
Sbjct: 520 SPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADR--PDVRF 565
>11_01_0359 - 2731522-2732346
Length = 274
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 431 SPPQKIRYNPPHGPPMVYPVYHGTPPP 511
+PP +PP PP Y +H PPP
Sbjct: 43 APPPHSHSHPPPPPPHAYHHHHYPPPP 69
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 614 ATPPTSRNQAKFASSA*RETTGIMKKLKSIVS 709
A PP SR+ + +SSA R+ TG M + S+VS
Sbjct: 339 AAPPFSRSPSSRSSSASRQPTGPMAQDDSVVS 370
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +2
Query: 434 PPQKIRYNPPHGP-PMVYPVYHGTPPP 511
PP + PPH P P P G PPP
Sbjct: 50 PPHYYQAGPPHAPPPQQPPAMWGQPPP 76
>05_03_0228 - 10662930-10663417,10663482-10663632
Length = 212
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 458 PPHGPPMVYPVYHGTPPPTFT 520
PPHGPP + P+ P T T
Sbjct: 37 PPHGPPSLQPIATAAPTATTT 57
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Frame = +2
Query: 434 PPQKIRYNPPHG----PPMVYPVYHGTPPP 511
PP Y PP G PP YP HG P P
Sbjct: 48 PPPPGAYPPPPGAYPPPPGAYPPQHGYPQP 77
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +2
Query: 434 PPQKIRYNPPHGP----PMVYPVYHGTPPP 511
PP+ +R PP P P YP YH P P
Sbjct: 193 PPEALRPLPPFPPTMLAPPAYPYYHPQPQP 222
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 431 SPPQKIRYNPPHGPPMVYPVYH-GTPPPTFTRRKTLEA 541
SPP+ P PP++ + H TPPP+ +++ TL A
Sbjct: 369 SPPEPPSPRHPASPPLLRSLPHQPTPPPSPSQQPTLPA 406
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 388 SINDPYHDTQPLSLQSPAKNKIQSAPRPTNGLPSLPRNPSAYVYQAQNSG 537
+I DP + L++ NK+ S PTN +LP Y+Y Q G
Sbjct: 213 AIPDPIWNISSLTIFEVISNKL-SGTLPTNAFSNLPSLQEVYMYYNQFHG 261
>08_01_0793 - 7685702-7686955
Length = 417
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 431 SPPQKIRYNPPHGPPMVYPVYHGTPPPTF 517
SPP +NP GPP Y +Y G+ PP F
Sbjct: 49 SPPNFQTFNP-FGPPANYHLY-GSSPPNF 75
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 131 DIPIQSPEDFWSRRIVRFGRTRISIFWRPIW 223
DIP++ PE F +V R R S+F P+W
Sbjct: 678 DIPVEPPEMFLPGLVVHIERQRRSLF--PLW 706
>02_03_0114 + 15410368-15410760,15412301-15412342
Length = 144
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 658 RTCKFRLVSACRWSGYARKPFQPARRDSKALIRLKAFRICFQSFAPG 518
R C RL + Y +PF PA D IR A +CF S G
Sbjct: 76 RFCNGRLATDFYSEAYGLRPFVPAYLDPDYGIRDFATGVCFASAGSG 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,435,219
Number of Sequences: 37544
Number of extensions: 416848
Number of successful extensions: 1586
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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