Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021042
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    42   4e-06
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   3.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 230 RQRGPDARVSDGTLEIVSLYRNDTGVYICIAENEFGIS-QQEIHLQVNDPVRTPVGIAGE 406
           +   PD +V DGTL I ++ + + G Y+C A N  G      I + V  P +  + +  +
Sbjct: 747 KPNNPDIKVEDGTLTINNIQKTNEGYYLCEAVNGIGSGLSAVIQISVQAPPQFDIKLRNQ 806

Query: 407 QNEVITGEMGRPLVLRCLVYGYPTPEIFW 493
                T   G P VL+C   G     I W
Sbjct: 807 -----TSRRGDPAVLQCEAKGEKPIGILW 830



 Score = 41.1 bits (92), Expect = 9e-06
 Identities = 24/79 (30%), Positives = 38/79 (48%)
 Frame = +2

Query: 257 SDGTLEIVSLYRNDTGVYICIAENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMG 436
           ++  L I S+ + D G+Y C   N+   ++    L++      P  I    NE  T + G
Sbjct: 371 NEAVLRIESVRKEDKGMYQCFIRNDQESAEATAELKLGGRFEPPQ-IRHAFNEE-TVQPG 428

Query: 437 RPLVLRCLVYGYPTPEIFW 493
             + L+C+  G PTPEI W
Sbjct: 429 NSVFLKCIASGNPTPEITW 447



 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = +2

Query: 263 GTLEIVSLYRNDTGVYICIAENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRP 442
           GTL I      D+G Y+C+  N  G    E  L V  P++  +     + +V T + GRP
Sbjct: 290 GTLIIREAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLKAKI-----EPQVQTIDFGRP 344

Query: 443 LVLRCLVYGYPTPEIFWYR 499
               C   G P   I W +
Sbjct: 345 ATFTCNFEGNPIKTISWLK 363



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 269 LEIVSLYRNDTGVYICIAENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPLV 448
           L I +++ ND G+Y C+A ++ G +     + V      P   + E+  ++    G  L+
Sbjct: 476 LNITAIHTNDGGLYRCVASSKVGSADHSARINV---YGLPFVRSMEKQAIVA---GGTLI 529

Query: 449 LRCLVYGYPTPEIFWYR-GLNVP 514
           + C   G+P   + W R G  +P
Sbjct: 530 VHCPFAGHPVDSVVWERDGRQLP 552



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 260  DGTLEIVSLYRNDTGVYICIAENEFGISQQEIHLQVNDPVRTP 388
            DG+L I  + RN+ G Y C  EN++G       L VN P   P
Sbjct: 1358 DGSLFIRDVSRNNAGEYSCHVENDYGQDSVTHQLIVNAPPHAP 1400



 Score = 32.7 bits (71), Expect = 0.003
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +2

Query: 266 TLEIVSLYRNDTGVYICIAENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPL 445
           TL I ++     G Y C+A N   ++     L +N P   P  I    ++      G   
Sbjct: 662 TLSIDNVQSTHVGNYTCLASNSASVTTYTTSLFINVP---PRWILEPTDKAFA--QGSDA 716

Query: 446 VLRCLVYGYPTPEIFWYRGLNV 511
            + C   G+P P + W R   V
Sbjct: 717 AVECKADGFPRPVVTWKRATGV 738



 Score = 31.5 bits (68), Expect = 0.008
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 123 EPEVNAAEGGK-ATLRCIFHGNMPPKITWRKGEITIDGSEGRTRV 254
           EP+V   + G+ AT  C F GN    I+W K    ID +E   R+
Sbjct: 333 EPQVQTIDFGRPATFTCNFEGNPIKTISWLKDGHPIDHNEAVLRI 377



 Score = 31.1 bits (67), Expect = 0.010
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 269 LEIVSLYRNDTGVYICIAENEFGISQQEIHLQVNDPVRTPVGI 397
           L I    R+D+ ++ C+A N FG     I++ V +    P G+
Sbjct: 860 LSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVPYGL 902



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 446 VLRCLVYGYPTPEIFWYR 499
           V+ C  +G PTP+I W R
Sbjct: 42  VVECSAHGNPTPDIIWVR 59



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 129 EVNAAEGGKATLRCIFHGNMPPKITW 206
           E     G    L+CI  GN  P+ITW
Sbjct: 422 EETVQPGNSVFLKCIASGNPTPEITW 447



 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 156 ATLRCIFHGNMPPKITWRKGEITIDG 233
           A + C  HGN  P I W + + T  G
Sbjct: 41  AVVECSAHGNPTPDIIWVRSDGTAVG 66



 Score = 24.6 bits (51), Expect = 0.86
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +2

Query: 320  AENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPLVLRCLVYGYPTPEIFW 493
            A    G  Q    + V+     P  IA   ++  T      + L CL  G P P I W
Sbjct: 1284 AATTIGEGQPSKKVTVSPSASVPAKIASF-DDTFTTTYKEDVTLPCLAVGLPPPVITW 1340



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 443 LVLRCLVYGYPTPEIFWYR 499
           + L C   G+P+P   WY+
Sbjct: 250 VALLCPAQGFPSPSFRWYK 268



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 159  TLRCIFHGNMPPKITWR 209
            TL C+  G  PP ITW+
Sbjct: 1325 TLPCLAVGLPPPVITWK 1341



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 123 EPEVNA-AEGGKATLRCIFHGNMPPKITWRK 212
           EP   A A+G  A + C   G   P +TW++
Sbjct: 704 EPTDKAFAQGSDAAVECKADGFPRPVVTWKR 734


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 751 RRRVHYQHVDPLRRAATLGT 692
           +RR+ YQ   P+ R   +GT
Sbjct: 38  KRRIFYQDESPISRLVYIGT 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,739
Number of Sequences: 336
Number of extensions: 3747
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)