Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021042
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.0  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   6.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   8.8  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 434 GRPLVLRCLVYGYP 475
           GRP  + CLVYG+P
Sbjct: 52  GRPWSISCLVYGFP 65


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 166 AVYSTGTCRPRSLGGKEKSLSTAARAGRACVGRHAGDRVA 285
           A+ S   CRP+    + +      R G+ C+  +  DR+A
Sbjct: 9   AIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIA 48


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +2

Query: 347 QEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPLVLRCLVYGYPTPEIFWYRGLNVPWCHT 526
           +E H ++  P    + + G  NE         +V   L  G  TP   W R    PWC T
Sbjct: 200 REYHKEMYVPSNICLIVTGCINESRLLSCASGIVKEILANGIITPPT-WTR----PWCST 254

Query: 527 AVHCTKPE 550
            V  T PE
Sbjct: 255 NVDYTIPE 262


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 387 GVLTGSFTCRWISCWLMPNSFSAMQM*TP-VSFRYSDTISSVPS 259
           GV+T    C WI   ++ N  +A++   P V + Y+ TI + PS
Sbjct: 196 GVITTQAECMWIHLGVISNVLTAVKTVFPNVRYAYT-TIPTYPS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,192
Number of Sequences: 5004
Number of extensions: 58873
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)