Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021042
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo...    31   0.62 
At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family pr...    30   1.4  
At3g63180.1 68416.m07097 expressed protein                             30   1.9  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    28   5.8  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    28   7.7  

>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985]
          Length = 951

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +2

Query: 164 ALYIPREHAAQDHLEERRNHYRRQRGPDARVSDGTLEIVSLYRNDTGVYICIAENEFGIS 343
           A+ I R     +   E     +R+ GP A V DG  +  +L   D G+ + ++ +     
Sbjct: 560 AMDIVRAELLPEDKSEIIKQLKREEGPTAMVGDGLNDAPALATADIGISMGVSGSALATE 619

Query: 344 QQEIHLQVNDPVRTPVGI 397
              I L  ND  R P  I
Sbjct: 620 TGNIILMSNDIRRIPQAI 637


>At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 483

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 440 PLVLRCLVYGYPTPEIFWYRGLNVPWCHTAVHCTKPEKT 556
           PL+++CL +G P  ++     L   WC T +   KPE+T
Sbjct: 129 PLLVQCLSFGSPDEQL-----LESAWCLTNIAAGKPEET 162


>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 435 ADRSSCAASCTDTRPRKSS-GTEDLTSHGAIQQYIVRSQRKRSSNKTTDRRGA 590
           A R S A+SC+ +  R+       L+S   +QQ+   SQ+   +   TD RG+
Sbjct: 642 AQRESKASSCSSSSHRQPQVSVNSLSSQANVQQHRQMSQKFEVAGVNTDSRGS 694


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 230 RQRGPDARVSDGTLEIVSLYRNDTGVYICIAENEFGISQQEIHLQVNDPVRTPVGI 397
           ++ GP A V DG  +  +L   D G+ + I+ +        I L  ND  R P  +
Sbjct: 591 KKEGPTAMVGDGVNDAPALATADIGISMGISGSALATQTGNIILMSNDIRRIPQAV 646


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 517 VPYSSTLYEARENVLLIRQLIDEALGEYACQAYNG 621
           + ++S+L + + +  + RQ +D   G Y C A NG
Sbjct: 290 ISFTSSLLKGKWSCGVCRQEVDRKYGAYTCNACNG 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,101
Number of Sequences: 28952
Number of extensions: 341850
Number of successful extensions: 1138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)