Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021041
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.65 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.65 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.65 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.65 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.1  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.0  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   8.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.0  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 GAGDRRQAVRPEHRHLQDLGRKYGLAGANDEEAFEIDQNVEFLND 337
           G+G +     P  +HLQ+LG +   A +++++  +  Q     ND
Sbjct: 153 GSGHQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNND 197


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 GAGDRRQAVRPEHRHLQDLGRKYGLAGANDEEAFEIDQNVEFLND 337
           G+G +     P  +HLQ+LG +   A +++++  +  Q     ND
Sbjct: 153 GSGHQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNND 197


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 6   VLLNNYSLLHNNPTMPNVKFYYFPVKAL 89
           +LL +   L +N   P + FYY P+K L
Sbjct: 114 LLLKHNLFLLDNIVKPIIAFYYKPIKTL 141


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 GAGDRRQAVRPEHRHLQDLGRKYGLAGANDEEAFEIDQNVEFLND 337
           G+G +     P  +HLQ+LG +   A +++++  +  Q     ND
Sbjct: 153 GSGHQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNND 197


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 680 HYWFLCQQSKKKTREYRKT 736
           H W     SKKKTR Y ++
Sbjct: 227 HKWKKNDSSKKKTRYYYRS 245


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 475 YRAWQVDLGR 504
           YR WQ+ LGR
Sbjct: 344 YRHWQIPLGR 353


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 165 PEFKPKTPFGQMPVLEIDGK 224
           P  KP+TPF    +L ++ K
Sbjct: 114 PNRKPRTPFTTQQLLALEKK 133


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  LHNNPTMPNVKFYYFPVKALGESQRL 107
           LH  PT  N++   +  +A+ ES RL
Sbjct: 50  LHRKPTYNNLQEMKYLERAIKESLRL 75


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 243 RCSGRTACRRSPAPA 199
           +C G     R+PAPA
Sbjct: 266 KCGGEEEAERAPAPA 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,041
Number of Sequences: 336
Number of extensions: 2488
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)