Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021041
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0629 - 5183504-5184970 33 0.25
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920... 32 0.43
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 30 2.3
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 3.0
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 29 4.0
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 29 4.0
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 5.3
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 28 7.0
11_03_0161 - 10949552-10950925 28 7.0
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 28 7.0
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 28 7.0
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 28 9.2
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 28 9.2
>12_01_0629 - 5183504-5184970
Length = 488
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 487 QVDLGRLLYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVKAY 630
+VD+G++LY GM+D L +L D + I A+LA P +
Sbjct: 166 EVDIGQVLYHGMFDLLANVLLSVDAHPNLRDLMEDIVAILAKPNASDF 213
>06_01_1196 +
10289708-10289823,10290828-10291541,10291614-10292058,
10292329-10293642
Length = 862
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -3
Query: 367 VVDRCGTGANVVQELHVLVDLEGLLVIGPGESVLATEVLQMAVLWAYCLPSISSTGI*PN 188
VVD T + V++EL L L L V+ G + L E+L A+ Y L S+ +
Sbjct: 616 VVDIRRTSSRVIKELGQLSKLRKLYVVTKGSTKLKCEILYTAIQKLYSLQSLHMDAVGCT 675
Query: 187 GV 182
G+
Sbjct: 676 GI 677
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 153 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRTSVASTDSP 281
S PE+ P G++P+LE +S AI R ++S+ P
Sbjct: 600 SNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVLSSSHFP 642
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 153 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
S PEF P G++PVLE +S AI R
Sbjct: 39 SNKTPEFLKMNPIGKIPVLETPDGPVFESNAIAR 72
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 138 DNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
D R ++ P F PFGQ+PVL+ + +S AI R
Sbjct: 39 DLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINR 77
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +3
Query: 57 VKFYYFPVKALGESQRLLLAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDGK 224
+K Y P+ + L G+++E D I+ PE + PFGQ+P L+
Sbjct: 3 MKVYGLPMSTNVARVLVCLEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQDGDL 62
Query: 225 QYAQSTAICRTSVASTDS 278
+S AI + + +S
Sbjct: 63 ILFESRAISKYVLRKNNS 80
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 165 PEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
PE + PFG++PVLE QS AI R
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIAR 73
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 439 ETQ*DTDEEQRSYRAWQVDLGRLLYAGMYDYLKAMLQKPDLEQK 570
E + D D+E SY +W VD Y +++A+ QK E++
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYR---QHVEALAQKQLFEEQ 1612
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +3
Query: 30 LHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVL 209
L +PT+ VK + ++R+L Y G + E W K T + +P+
Sbjct: 171 LQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPIT 230
Query: 210 EID 218
++D
Sbjct: 231 DLD 233
>11_03_0161 - 10949552-10950925
Length = 457
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 191 RSDAGAGDRRQAVRPEHRHLQDLGRKYGLAGANDEEAFEID 313
R GAGD R V P H L+D +YG A AF++D
Sbjct: 93 REVQGAGDWRGMVEPLHPLLRDEVVRYGELVAACYRAFDLD 133
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +3
Query: 30 LHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVL 209
L +PT+ VK + ++R+L Y G + E W K T + +P+
Sbjct: 166 LQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPIT 225
Query: 210 EID 218
++D
Sbjct: 226 DLD 228
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 153 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
S PEF P G++PVLE +S AI R
Sbjct: 63 SNKTPEFLKMNPLGKIPVLETPEGAVFESNAIAR 96
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 343 ANVVQELHVLVDLEGLLVIGPGESVL 266
AN + E+H+ + LE LL +GP ++ L
Sbjct: 550 ANGINEMHLQIRLEKLLTLGPDDNQL 575
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 183 TPFGQMPVLEIDGKQYAQSTAICRTSVASTDS 278
TP+G++ V E +GK AI +SVA D+
Sbjct: 444 TPWGELEVYEYNGKYTEHRAAIDSSSVADDDT 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,642,305
Number of Sequences: 37544
Number of extensions: 289479
Number of successful extensions: 915
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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