Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021041
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17220.1 68418.m02018 glutathione S-transferase, putative           31   1.1  
At2g30870.1 68415.m03762 glutathione S-transferase, putative sup...    29   2.5  
At2g06120.1 68415.m00672 hypothetical protein contains Pfam prof...    29   3.3  
At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ...    29   4.4  
At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ...    29   4.4  
At1g75270.1 68414.m08744 dehydroascorbate reductase, putative si...    29   4.4  
At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TS...    28   5.8  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    28   5.8  
At1g51560.1 68414.m05803 expressed protein                             28   7.7  

>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = +3

Query: 99  QRLLLAY--GGQEFEDNRISSENWPEFKP----KTPFGQMPVLEIDGKQYAQSTAICR 254
           QR+LL +   G EFE   I  + + + KP    + PFGQ+P +E    +  +S AI R
Sbjct: 15  QRVLLCFLEKGIEFEIIHIDLDTFEQKKPEHLLRQPFGQVPAIEDGDFKLFESRAIAR 72


>At2g30870.1 68415.m03762 glutathione S-transferase, putative
           supported by cDNA GI:443698 GB:D17673
          Length = 215

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +3

Query: 69  YFPVKALGESQRLLLAYGGQEFEDNRIS----SENWPEFKPKTPFGQMPVLEIDGK-QYA 233
           Y P+ A  +   + L   G  FE   +      +  PE+    PFG++PVL +DG  +  
Sbjct: 6   YAPLFASSKRAVVTLVEKGVSFETVNVDLMKGEQRQPEYLAIQPFGKIPVL-VDGDYKIF 64

Query: 234 QSTAICRTSVASTDSPGP 287
           +S AI R       S GP
Sbjct: 65  ESRAIMRYIAEKYRSQGP 82


>At2g06120.1 68415.m00672 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 473

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 496 LGRLLYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAI 612
           LG   + G     +A +Q PD+E+K  + +KP EA L +
Sbjct: 53  LGSTTFVGKSFGPRATIQYPDVEEKLMSMKKPSEARLRV 91


>At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9
           (SPL9) identical to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 369

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 267 LRPRSCRWRCSGRTACRRSPAPAS 196
           L  RSCR R +G    RR P PAS
Sbjct: 129 LEKRSCRRRLAGHNERRRKPQPAS 152


>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
           (SPL9) identical to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 375

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 267 LRPRSCRWRCSGRTACRRSPAPAS 196
           L  RSCR R +G    RR P PAS
Sbjct: 129 LEKRSCRRRLAGHNERRRKPQPAS 152


>At1g75270.1 68414.m08744 dehydroascorbate reductase, putative
           similar to GI:6939839 from [Oryza sativa]
          Length = 213

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +3

Query: 96  SQRLLLAYGGQE--FEDNRISSENWPE-FKPKTPFGQMPVLEIDGKQYAQSTAI 248
           SQR+LL    ++  ++ + I+  + P+ F   +P G++PV+++DGK  A S  I
Sbjct: 23  SQRVLLTLEEKKLPYKTHLINVSDKPQWFLDISPEGKVPVVKLDGKWVADSDVI 76


>At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TSB2)
           identical to SP|25269
          Length = 475

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 206 AGDRRQAVRPEHRHLQDLGRKYGLAGANDEEAFEIDQNVEFLNDIRASAASVH 364
           AG     V PEH  L+D+GR    +   DEEA E  + V  L  I  +  + H
Sbjct: 385 AGLDYPGVGPEHSFLKDVGRAEYFS-VTDEEALEAFKRVSRLEGIIPALETSH 436


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +3

Query: 39  NPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEID 218
           +PT+  V+      +   +++R+L  Y G        + E W   K  T +  +P+ E+D
Sbjct: 173 DPTVDEVRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELD 232


>At1g51560.1 68414.m05803 expressed protein
          Length = 392

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 16  TIIHYCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNL 180
           T ++ C I +   T  +  +P+ P A +   CWL  +++ + I   ++ G N  L
Sbjct: 7   TSVYVCNIPK---TKKAFFNPN-PPALSSSSCWLCNSQAKQIIKLRIREGSNQGL 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,622
Number of Sequences: 28952
Number of extensions: 219787
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)