Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021040
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.029
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 133  AATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPP 264
            A T  Q T P   + + PP + A   + E+ P +   S  +PPP
Sbjct: 1767 AGTGQQETIPP--IDEEPPSVEAVEEEREEAPPSVHSSTVVPPP 1808


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +1

Query: 121 PPPMAATSSQSTAPRSGVTQGPPPMAAPSSQV--EKCPGAPRGSQAIPPP 264
           P P   T+S    P   V   P P+A+P  Q        A  G+    PP
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPP 120


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -3

Query: 136 PPSVAVPASLPNAARPTQLVAVRLVMLSPRQLRCRAGQGVTTSSS 2
           P SVA P  +P  +       V +   SP+    R    +T   S
Sbjct: 215 PRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNITPHGS 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.124    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,651
Number of Sequences: 336
Number of extensions: 3349
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)