Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021040
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 44 2e-05
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 37 0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.031
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.29
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.51
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 29 0.88
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.2
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.0
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.0
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 27 2.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 3.6
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.7
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.7
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 26 6.2
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 26 6.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.2
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 8.2
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 8.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 94 APRLGVTQGPPPMAATSSQSTAPRS--GVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPPA 267
AP + V PP+ +S P+S G PPP+ APSS++ P AP G+ +P P+
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP-APSGAPPVPAPS 1089
Score = 35.1 bits (77), Expect = 0.010
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 31 PGNEAVSGSTSQDAQQRAVSAA-PRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPS 207
P ++ SG+ S A S+ P + G PP+ A S P+ V PP+ PS
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV--AAPPVPKPS 1108
Query: 208 SQVEKCPGAPRGSQAIPPPA 267
V P AP G+ +P P+
Sbjct: 1109 VAVPPVP-APSGAPPVPKPS 1127
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 124 PPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPPAK 270
PP+ A S P+ V PP+ APSS + P G +PPP++
Sbjct: 1150 PPVPAPSGAPPVPKPSVAA--PPVPAPSSGIPPVPKPAAGVPPVPPPSE 1196
Score = 33.9 bits (74), Expect = 0.023
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +1
Query: 91 AAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPPA 267
AAP + V G PP+ S AP G PP+ PS P G +P PA
Sbjct: 1129 AAPPVPVPSGAPPVPKPSV--AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
Score = 29.9 bits (64), Expect = 0.38
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +1
Query: 97 PRLGVTQGPPPMAA----TSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPP 264
P +GV PPP A T S P T PP+ APSS+ PR S +P P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV-STPRSS--VPSP 1259
Score = 28.7 bits (61), Expect = 0.88
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +1
Query: 82 AVSAAPRLGVTQGPPPMAATSSQSTAPRSGVT-------QGPPPMAAPSSQVEKCPGAPR 240
+V+A P + PP+ A S P+ V G PP+ PS P AP
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP-APS 1156
Query: 241 GSQAIPPPA 267
G+ +P P+
Sbjct: 1157 GAPPVPKPS 1165
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 88 SAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPPA 267
++ PR PP S+ ++P S + PP A S V P AP +PP
Sbjct: 958 ASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLA--RVPPVP 1015
Query: 268 K 270
K
Sbjct: 1016 K 1016
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +1
Query: 97 PRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKC--PGAPRGSQAIPP 261
P GV PPP A P GV PPP AP P P + PP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPK--PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +1
Query: 58 TSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAP 237
T Q + SA PR + PPP A++ + + PP A P++ V+ P AP
Sbjct: 132 TPQSELRPPTSAPPRPSI---PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Query: 238 RGSQAIPP 261
A+PP
Sbjct: 189 SLPSAVPP 196
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 82 AVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQV-EKCPGAPRGSQAIP 258
+ SAAP P S PR + PPP A + + K P P ++P
Sbjct: 119 SASAAPPSAPAPPTPQSELRPPTSAPPRPSI---PPPSPASAPPIPSKAPPIP---SSLP 172
Query: 259 PPAK 270
PPA+
Sbjct: 173 PPAQ 176
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.031
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 31 PGNEAVSGSTSQDAQQRA-VSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPS 207
P N VS + + A VS P + T PP +S S A + + PPP PS
Sbjct: 259 PSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPS 318
Query: 208 SQVEKCPGAPRGS--QAIPPP 264
+ P GS ++PPP
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPP 339
Score = 33.1 bits (72), Expect = 0.041
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = +1
Query: 31 PGNEAVSGSTSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSS 210
P + VS + ++R P +G PP+ SS S+ P PPP S+
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLP-------PPPPPPRSN 346
Query: 211 QVEKCPGAPRGSQAIPPP 264
P P+G A PPP
Sbjct: 347 AAGSIPLPPQGRSAPPPP 364
Score = 29.9 bits (64), Expect = 0.38
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +1
Query: 124 PPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPP 261
PP+ S ST P PP A PS P P G+ A PP
Sbjct: 404 PPLGNASRTSTPPVP-TPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 121 PPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIP-PPA 267
PPP + + P G + PPP + + P S+A+ PPA
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPA 390
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Frame = +1
Query: 124 PPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAP------RGSQAIPP 261
PP ++ PRS + G P SS+ P AP R + A+PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.29
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 121 PP--PMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPP 264
PP P +A Q +AP T PPPM+ P P P G + PPP
Sbjct: 1690 PPVRPQSAAPPQMSAP----TPPPPPMSVPPPP--SAPPMPAGPPSAPPP 1733
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 88 SAAPRLGV-TQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCP 228
+A P++ T PPPM+ S P PP P+S P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.51
Identities = 22/78 (28%), Positives = 28/78 (35%)
Frame = +1
Query: 34 GNEAVSGSTSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQ 213
G A+S + + S + G PP A +S S S T P P A P+S
Sbjct: 376 GGSAISNGNGEPQKSIEFSESGAASPQAGHPPPWAAASTSV---SSSTSSPAPWAKPASS 432
Query: 214 VEKCPGAPRGSQAIPPPA 267
AP A P A
Sbjct: 433 AAPSNPAPWQQPAAPQSA 450
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 82 AVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGS 246
++S R V GPPP S+ S P + + G P + V P + R S
Sbjct: 569 SISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPGAMANVSAGPSSVRSS 623
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +1
Query: 58 TSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAP 237
TSQ A +A P +T P ++ T R V GPPP PS+ K P
Sbjct: 547 TSQQLNP-APTAMPHPNITSPSPSISVTQ------RPAVNVGPPPYVRPSAP-SKLPDTR 598
Query: 238 RG-SQAIPPPA 267
+ +PP A
Sbjct: 599 QSIGDPLPPGA 609
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +1
Query: 118 GPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPPAKY 273
GPPP + S+ P + + P A +SQ AP Q PP Y
Sbjct: 61 GPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAP---QPYPPQGGY 109
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +1
Query: 121 PPPMAATSSQSTAPRSGVTQGPPPMAA-----PSSQVEKCPGAPRGSQAIPPP 264
P P+ T ++ P S + PP +A+ P+S K QA+PPP
Sbjct: 1923 PAPVPLTGKETAVPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPP 1975
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 394 ASYPRARTRSQRSRPIQLYTGPTSRTPLPKSRRQKKAPPPRR-DGATSTRIFKKVEST 564
A+ P R RS P + P P R ++APPP G +S F + ST
Sbjct: 7 AAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSPGFFGNLVST 64
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/64 (20%), Positives = 27/64 (42%)
Frame = +1
Query: 22 LDRPGNEAVSGSTSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAA 201
+ +P A G+TS + A + + PP T ++ + +G P+++
Sbjct: 1 MQKPSGNADIGATSSERTAYAAPQRAAVDTSNVSPPSTQTGGYASKDTTSTYEGAQPLSS 60
Query: 202 PSSQ 213
SS+
Sbjct: 61 QSSR 64
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 427 RSRPIQLYTGPTSRTPLPKSRRQKKAPPPRRDGATSTRIFKKVE 558
R PI + S TP+ + PPP G +S++ F K+E
Sbjct: 117 RLPPISGHVQAISNTPIVTQEMLAQHPPPSTVGGSSSQEFVKLE 160
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +3
Query: 588 RASKKSIFAPRKNKPDSKQSSLPPASQH*KPKRSLKKRK 704
+ S K+ +P+K+K ++K++S P S K+S+KK+K
Sbjct: 42 KQSSKTDVSPKKSKKEAKRASSPEPS-----KKSVKKQK 75
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = +1
Query: 73 QQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQA 252
+ AV A P Q P AA+SS P PP AP V+ P AP+
Sbjct: 198 EDSAVKAQPPPPPPQQNYPPAASSS--APPMQYQQTAYPPQQAPYPPVQAYPQAPQQPIV 255
Query: 253 IPPPAKY 273
+ P ++
Sbjct: 256 VAQPTEH 262
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 481 KSRRQKKAPPPRRDGATSTRIFKKVESTVTTAVAYGAPQRRASSRQGRTSPTPSRARCR 657
K++ +K+ R+ G + + +K+ES T + R+ S + TPSR + R
Sbjct: 1218 KTQPKKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSREQSR 1276
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 472 PLPKSRRQKKAPPPRRDGATSTR--IFKKVESTVTTAVAY-GAPQRRAS 609
P+P+ QKKAP ++D S + I + +T AY APQ A+
Sbjct: 986 PIPEPEEQKKAPVEKKDAEKSVQAPIPAQPTGNITIQNAYFTAPQPMAA 1034
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +1
Query: 88 SAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPP 264
S+AP +Q P + +AP S V+ PPP P S P PPP
Sbjct: 140 SSAP---ASQEPSASGVNAPTVSAPNSMVS--PPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 4.7
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -3
Query: 322 TPLFGPVGDAGEYCVGNIWREGGSLVN 242
T P+G +GE C+ ++ + G ++++
Sbjct: 2066 TNTLAPIGSSGELCIASVKKSGNTMMD 2092
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +1
Query: 37 NEAVSGSTSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPP 189
N +V+ + + A T+GP P + S+ +T+P +G P
Sbjct: 203 NSSVTSNPPHTEEPVAAKPEASSTATKGPRPTTSASNTNTSPANGAPTNKP 253
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 307 PVGDAGEYCVGNIWREGGSLVNPAALPDTFPLGR 206
P G GE CV I G L NPAA +F R
Sbjct: 349 PQGKEGEICVRGINVTKGYLNNPAANKSSFTKDR 382
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 6.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 34 GNEAVSGSTSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPM----AA 201
G E V Q +Q SA PR G++ ++ +TAP PPPM AA
Sbjct: 119 GLETVDALRQQQNEQNNASA-PRTGISTSTNSFYGNNAAATAP------APPPMMKKPAA 171
Query: 202 PSS 210
P+S
Sbjct: 172 PNS 174
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +1
Query: 91 AAPRLGVTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPPPAK 270
AAP + + P P A+++ + R+ PP +S P A PPP K
Sbjct: 876 AAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAI-----ASPPPPK 930
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 478 AAASVMWDPCTIVLAVSADSLFWLADMTL 392
+A V+W CT+V+A+ S+F++ L
Sbjct: 548 SAFRVIWIFCTVVMAIGFASIFFIKSRPL 576
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 PRLGVTQGPPPMAATSSQST--APRSGVTQGPPPMAAPSS 210
PR + P P + S ST P S T PP + PS+
Sbjct: 392 PRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSN 431
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 14 RHALTGPATKLSRAQHHKTHSNEL 85
RH P++ L+ +HH+ H +EL
Sbjct: 142 RHQSPPPSSVLASQRHHRRHDSEL 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.124 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,485
Number of Sequences: 5004
Number of extensions: 47739
Number of successful extensions: 208
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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