Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021040
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.41 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 109 VTQGPPPMAATSSQSTAPRSGVTQGPPPMAAPSSQVEKCPGAPRGSQAIPP 261
           +TQ   P+    SQ   P SG   GP P    S Q  +    P  SQ  PP
Sbjct: 1   MTQQKQPIITQQSQQ--PSSGAP-GPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +1

Query: 118 GPPPMAATSSQSTAPRSGV----TQGPPPMAAPSSQVEKCP 228
           GP P    S Q  AP+ G     +QGPPP   P +   + P
Sbjct: 22  GPQPSPHQSPQ--APQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +1

Query: 88  SAAPRLGVTQGPPPMAATSSQSTAPRSGVTQ 180
           S  P  G   G PP    S    +P SG+ Q
Sbjct: 43  SQGPPPGGPPGAPPSQNPSQMMISPASGIHQ 73


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +1

Query: 37  NEAVSGSTSQDAQQRAVSAAPRLGVTQGPPPMAATSSQSTAPRSG 171
           +E V  + S  +    +++AP    +  PP   A ++   + R+G
Sbjct: 501 HEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 64  QDAQQRAVSAAPRLGVTQGPPPM----AATSSQSTAPR 165
           Q  QQ++ S    +G +    P     AATSS ST+PR
Sbjct: 806 QQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPR 843


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 600 KSIFAPRKNKPDSKQSS 650
           K    P KN PDSK+ S
Sbjct: 191 KDNLIPDKNDPDSKECS 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.124    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,239
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)