Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021039
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.1  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 244 SHIPNNIVYDIPAHIERKPGHFNP 315
           S    + V   PA ++  P HFNP
Sbjct: 14  SEAARDFVQGYPASVQPLPRHFNP 37


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 262  IVYDIPAHIERKPGHFNPSLTFP 330
            + YD   H +++ GH  P   +P
Sbjct: 2511 MTYDFHGHWDKQTGHVAPLYYYP 2533


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -3

Query: 315 RVEMTWFPF 289
           ++++TWFPF
Sbjct: 129 KIDITWFPF 137


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 605 LEADEFQTSTRKGYSALCRHRNQ 673
           +E D F  S ++G + + RH  +
Sbjct: 524 IELDRFAVSLKQGTNTITRHSTE 546


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 495 REEKYETLHCLLQSVQQ 545
           R   +  +HCLLQ  QQ
Sbjct: 80  RRSNWFKIHCLLQEQQQ 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,106
Number of Sequences: 336
Number of extensions: 4030
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)