Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021039
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0313 + 14233049-14234362,14234558-14235523                       29   4.0  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    28   9.3  
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835           28   9.3  

>04_03_0313 + 14233049-14234362,14234558-14235523
          Length = 759

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 505 NMKLCIAYFNQFNKMKNILSLFLLGCPLIMM-ESLG 609
           N+K+ I +FNQ   + NIL + L GC L+ + ES+G
Sbjct: 549 NLKVEITWFNQ---LSNILFMSLQGCKLVKLPESIG 581


>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 472  VIVDARIQEKKNMKLCIAYFNQFNKMKNILSLFLLGCPLIMMESL 606
            +I D +  EK+N+K C+   N  N+ + I  + L G    +M+SL
Sbjct: 5063 IISDGKFHEKENLKRCVR--NVLNRKRMIAYVLLDGHEESIMDSL 5105


>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
          Length = 1091

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 538 FNKMKNILSLFLLGCPLIMM-ESLG 609
           FN++ NIL L L GC L+ + ES+G
Sbjct: 620 FNQLSNILYLSLKGCKLVKLPESIG 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,382,203
Number of Sequences: 37544
Number of extensions: 392811
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)