Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021039
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z74039-5|CAA98504.1|  479|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    28   6.3  

>AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical
           protein C44E4.5 protein.
          Length = 538

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 8   LELDFEGYKLNLQALPHYSLELASPVDKVYPDDVQYSFVHAKLFALHNHLVLDY 169
           ++ +FEGYK+++  +   S  L   +    P +   +  H K+F+  N L  DY
Sbjct: 13  IDANFEGYKVSMNNVHFSSKSLDQNLCLRAPSNEMITLQHMKVFSNDNQLFCDY 66


>Z74039-5|CAA98504.1|  479|Caenorhabditis elegans Hypothetical
           protein K03B8.5 protein.
          Length = 479

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 104 DVQYSFVHAKLFALHNHLVLDYWDYSF-NYYYIDKNQQVRHVTFENI----NHT 250
           D++ S+ H ++      L    W Y   NYYY DKN +++ +    I    NHT
Sbjct: 112 DIEESYSHKRVKRQFERLGTK-WSYGVVNYYYADKNNEIKEMVESAIAYIANHT 164


>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 65  LELASPVDKVYPDDVQYSFVHAKLFALHNHLVLDYWDYSFNY 190
           L L SP+D+V   D  +  VH   +    H V D    S NY
Sbjct: 325 LNLESPIDRVAGFDTPFPHVHEPFYLPTVHRVFDAIKKSVNY 366


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 635 LYLSETHLLPRLSIIIKGHPSKNRLKMFFI 546
           ++ S+ H LP L   +KGHPS  R KM F+
Sbjct: 718 VFTSDPHSLPVLGWNMKGHPSIWRHKMPFL 747


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,289,232
Number of Sequences: 27780
Number of extensions: 366338
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)