Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021039
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   9.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 608 PRLSIIIKGHPSKNRLKMFFIL 543
           P   I+ +G P   R KMFF L
Sbjct: 603 PERLILPRGKPEGMRYKMFFFL 624


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 608 PRLSIIIKGHPSKNRLKMFFIL 543
           P   I+ +G P   R KMFF L
Sbjct: 603 PERLILPRGKPEGMRYKMFFFL 624


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -3

Query: 315 RVEMTWFPF 289
           ++++TWFPF
Sbjct: 112 KIDITWFPF 120


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -3

Query: 315 RVEMTWFPF 289
           ++++TWFPF
Sbjct: 112 KIDITWFPF 120


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -3

Query: 315 RVEMTWFPF 289
           ++++TWFPF
Sbjct: 180 KIDITWFPF 188


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -3

Query: 315 RVEMTWFPF 289
           ++++TWFPF
Sbjct: 180 KIDITWFPF 188


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -3

Query: 315 RVEMTWFPF 289
           ++++TWFPF
Sbjct: 149 KIDITWFPF 157


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +1

Query: 202 QKPASKTCYL*KYKSHIPNNIVYDIPAHIERKPGHFNPSLTFPASNLAVVSDGTGMLH 375
           + PAS   Y  K  + I     +++   + RK   F  +  FP   +  + DG  + H
Sbjct: 8   RNPASANYYENKDGARIVKASHFELDYMLGRKITFFCMATGFPRPEITWLKDGIELYH 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,318
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)