Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021037
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar... 28 1.4
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 28 1.8
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 28 1.8
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 2.4
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 3.2
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 3.2
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 27 3.2
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 4.2
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 27 4.2
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 5.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 7.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 7.3
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 26 7.3
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.7
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
>SPBP23A10.03c |||ACN9 family mitochondrial
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 115
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 376 RYSDAVQDYSHAQRVLQKYGNQPSFQSIQTECSEIIFELKKTLRE 510
RY+DA+++ S Q +KY N +S+ + ++EL K L+E
Sbjct: 69 RYADALENESWKQ---EKYSNTDLLESLNDQQIGQLYELSKALQE 110
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 92 LQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENI 223
++ ++ Y+N N+++ + V M SDFK Q + L +I
Sbjct: 101 VRKNLEKNFYKNLNEYVFISGEVESMTSDFKKFQSLLKTLETDI 144
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = -2
Query: 812 KNLNHYFISKFGYDSFLSNISL*QDIIIAKSANNVLLHFSTQSKMSVCSSYRTEHLQVFV 633
+N N F+S G F + + ++KS NV+ H K+ + R + V +
Sbjct: 73 ENANKVFLSVKGGLDFKTLVPDGNPDFVSKSVENVIAHLRGTKKLDLFQCARVDP-NVPI 131
Query: 632 KTTLCTTKEYI 600
+TT+ T K ++
Sbjct: 132 ETTMKTLKGFV 142
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +2
Query: 23 LLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDF-KIMQEE 199
+ + ++ Q + E + Q + E+Q V NY FI A+E + +R++ K++Q
Sbjct: 17 IFRTHSIAQTIQLEKFVSQQIEEKGRELQQNVCFNYQSFIEASENLSNIRNNLEKVLQNS 76
Query: 200 MNKLS----ENINKITTFSSQILKISKAA 274
S +++++ F S IS+ +
Sbjct: 77 YEFQSMVSLPKVDRVSKFLSDNESISQTS 105
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 400 YSHAQRVLQKYGNQPSFQSIQTECSEIIFELKKTLRED--LSVL 525
Y R+ Q+Y P++Q + S +I ++ T+R + LS+L
Sbjct: 175 YQIVMRIRQRYYRSPTYQQSMSSRSLLIMDIPTTMRSNNGLSIL 218
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 41 LKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSEN 220
+KQ+ E +Q Q L+ + +L Y+ N+ IS +E F+ M E +L N
Sbjct: 333 MKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISE--------FEKMVSEREQLDRN 384
Query: 221 INKITTFSSQILK 259
+N I + S++ K
Sbjct: 385 LNMIGSKISELRK 397
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 187 YFKIGTHFAYSFGRRNKFIIIFINQCLHF*LQKLTLSYNFRFFVH 53
YF IGT+F + R N +F + LH L K + R F H
Sbjct: 24 YFTIGTNFPHDELRHNLLSTLFCSSMLH--LSKGLTVKDVRIFFH 66
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = +2
Query: 5 DVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFK 184
D + DC+ K L++ +D ++ ++ L E+Q + N+ A + V +++S
Sbjct: 1274 DTFYDCIQKIEELEKQIDVARDVAEDTKSLGKELQNKI----NEKNLAEQKVEELQSQSF 1329
Query: 185 IMQEEMNKLSENINK 229
+E++ L + K
Sbjct: 1330 TKNKEVDLLRKKAQK 1344
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 148 RRNKFIIIFINQCLHF*LQKLTLSYNFRFFVH 53
RR K I++ CL F L+ + FRF++H
Sbjct: 60 RRKKHRYIYLAVCLFFLASVLSCAIIFRFYLH 91
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +2
Query: 38 TLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSE 217
TL ++D + + FLQ + L E+Y K +S + + + I+ E+++ + E
Sbjct: 1087 TLYSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSIIDEQVDTILE 1146
Query: 218 NINKI 232
+ KI
Sbjct: 1147 ALRKI 1151
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = +2
Query: 44 KQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENI 223
K ++ K A+++ + L + + LVY + ++ATE + K+ + + + M + +
Sbjct: 985 KYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATE-LGKVAASYYVTHNSMAIYNRLL 1043
Query: 224 NKITTF 241
+ T+F
Sbjct: 1044 MQTTSF 1049
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 352 LNKAIAEGRYSDAVQDYSHAQRVLQKYGNQPSFQSIQTECSEIIFELKKTL 504
L KA R V DY + + N S+++I+++ S +IFE+ L
Sbjct: 307 LFKATLVTRKGSRVSDYPSFFKAYLQIPNLVSWENIESDLSVLIFEISALL 357
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +2
Query: 32 CATLKQVMDKEAEIVTQSQFLQSEMQTLVYENY--NKFISATETVRKMRSDFKIMQEEMN 205
C TL Q+++KEA+ + L Y+ + ++F E+++ ++ DF +++ +
Sbjct: 869 CMTLTQILEKEAD---------AYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDWLK 919
Query: 206 KLSENINK 229
L +++++
Sbjct: 920 ALEKDVDE 927
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +2
Query: 41 LKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSEN 220
LK + D+ + F + ++ + ++ N E V SD K+ ++E N EN
Sbjct: 732 LKDLPDRNVGNSEKVTFQEDDINSPKLQSKNN--QTVEAVNTETSD-KLQEKEANHELEN 788
Query: 221 INKITTFSSQILKIS 265
I KI +++ K+S
Sbjct: 789 IEKIEEKLTEVDKVS 803
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 803 NHYFISKFGYDSFLSNISL*QDIIIAKSANNVLLHFSTQS 684
NH K + S +SN SL I+ N LLH++ ++
Sbjct: 277 NHQHSGKPDHPSLVSNASLAPFIVEGNGIKNGLLHYNMET 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,268
Number of Sequences: 5004
Number of extensions: 63983
Number of successful extensions: 205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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