Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021037
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 57 2e-08
12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782... 35 0.067
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 32 0.47
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967... 31 1.1
05_05_0317 + 24039343-24042717 30 2.5
03_03_0031 + 13922727-13923004,13925052-13925184,13925505-13925666 30 2.5
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 29 4.4
02_05_1155 + 34519080-34519313,34519622-34519665,34519901-345199... 29 5.8
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 7.7
02_01_0294 + 1968162-1968212,1969379-1969484,1969785-1969970,197... 28 7.7
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 56.8 bits (131), Expect = 2e-08
Identities = 23/73 (31%), Positives = 47/73 (64%)
Frame = +2
Query: 35 ATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLS 214
+ L+ ++ + ++ + + L +++Q LVYENYNKFISAT+T+++M+++ M+ M +L
Sbjct: 14 SNLEALLQRHVKMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKTNIVGMEANMEQLL 73
Query: 215 ENINKITTFSSQI 253
I + + S +
Sbjct: 74 SKITSVQSRSDTV 86
Score = 35.5 bits (78), Expect = 0.051
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +1
Query: 280 NVRRLCGTRXXXXXXXXXXXXPSQLNKAIAEGRYSDAVQDYSHAQRVLQKYGNQPSFQSI 459
N+ +L TR P++LNK I Y+DAV+ ++ A+ + + YG+ SF
Sbjct: 96 NIEKLHRTRNLLRKVQFIYDLPTRLNKCIKTEAYADAVRFFTGAKPIFEAYGD-TSFHDC 154
Query: 460 QTECSEIIFELKKTLREDL 516
+ E I + + L+ L
Sbjct: 155 KKASEEAIDLVTQHLKTKL 173
>12_02_0645 +
21475126-21475293,21475386-21475538,21478101-21478249,
21478449-21478526,21478604-21478697,21478920-21478994,
21479341-21479637,21479722-21479789,21479876-21479930,
21480137-21480275,21480439-21480623,21480748-21481119
Length = 610
Score = 35.1 bits (77), Expect = 0.067
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 53 MDKEAEIV-TQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINK 229
+ KE E++ ++ ++ +MQ + ENY FI+A+E + +R+ + + L E I
Sbjct: 54 LHKEPELLRVDAERVRRQMQEVAVENYGAFIAASEALSFVRAQLEGFDRHLEALIEEIPN 113
Query: 230 ITTFSSQILK 259
+T+ ++ ++
Sbjct: 114 LTSGCTEFVE 123
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 32.3 bits (70), Expect = 0.47
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 334 KGTEVYLTAVLYHTNVEHYYRCLGDFQYLRAECSYFIDILAKFIHFFLHYFKI 176
K V A+ +TNV RC G + +R C+ + K H FLH F+I
Sbjct: 632 KPNSVLKPAIFENTNVLQQLRCSGVLEAIRISCAGY--PTRKLFHDFLHRFRI 682
>03_03_0028 +
13893813-13893959,13894961-13895264,13896557-13896761,
13897428-13897646,13897734-13897869,13899130-13899387,
13899402-13899686
Length = 517
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 409 AQRVLQKYGNQPSFQSIQTECSEIIFELKKTL 504
A R + +YG++P F + E + + FEL K+L
Sbjct: 178 AMRYIHEYGDEPGFDGVVLELARLDFELVKSL 209
>05_05_0317 + 24039343-24042717
Length = 1124
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 38 TLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSE 217
TL Q++ + + ++ Q + V EN+++ ET+ + S F + MN L E
Sbjct: 213 TLTQLVYNDPRV---KEYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQE 269
Query: 218 NINK 229
+++K
Sbjct: 270 DLSK 273
>03_03_0031 + 13922727-13923004,13925052-13925184,13925505-13925666
Length = 190
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/46 (28%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 415 RVLQKYGNQPSFQSIQTECSEIIFELKKT--LREDLSVLIHLQLNL 546
R + +Y ++P+F + E +++ FEL ++ LRE ++ +H++L +
Sbjct: 54 RYIAEYEHEPAFDGVALELAKLDFELVRSLHLRELKALTLHIRLGV 99
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 32 CATLKQVMDKEAEIVT-QSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNK 208
C VM+++ E+ T + L S L ++ +S+ S+F ++ E+
Sbjct: 680 CPLDNLVMNQDEELFTVRLVSLGSSTANLSADHDTSNLSSPHIAASSLSEFAVLGFELGY 739
Query: 209 LSENINKITTFSSQILKISKAAVIMFD 289
EN N + + +Q S A ++FD
Sbjct: 740 SMENPNSLVLWEAQFGDFSNGAQVIFD 766
>02_05_1155 +
34519080-34519313,34519622-34519665,34519901-34519973,
34520895-34521043,34521698-34521859,34522301-34522360,
34522716-34522776
Length = 260
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 613 LRNISCKDESLSWSCLKRATLSASSVADVLGLISLHGVSSS 491
+R +SC++ +SCL A + +S +D +G S H + S
Sbjct: 166 IRFLSCRERKGDFSCLTVAGICEASTSDAIGSGSWHSNAGS 206
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 62 EAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINKITTF 241
E EI +S+ + S +L E K + A ++ M S + QEE+N+L I K+
Sbjct: 610 ELEITQKSESMDSLTLSLKDET-EKRVQAETSLMSMESMYSQSQEEVNRLHLEIEKLNFK 668
Query: 242 SSQILKIS 265
+++ +S
Sbjct: 669 LNELENLS 676
>02_01_0294 +
1968162-1968212,1969379-1969484,1969785-1969970,
1970562-1971011,1971121-1971204,1971378-1971445
Length = 314
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 379 YSDAVQDYSHAQRVLQKYGNQPSFQSIQTECSE 477
+SD +D+S + +L+ YG P S SE
Sbjct: 253 FSDLTEDFSQSAEILENYGRSPFIPSEPNNFSE 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,671,231
Number of Sequences: 37544
Number of extensions: 350612
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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