Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021037
         (813 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   2.8  
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    24   4.8  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   6.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   6.4  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 95  QSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSE 217
           + E   L+ E+  K    +E +R +    K ++EE  +LSE
Sbjct: 172 KEESMNLLRESEGKLEKISEYLRTIEDRLKTLEEEKEELSE 212


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 652 SICKCLSRRLSAQLRNISCKDES-LSWSCLKRATLSASSVADVLGLISLHGV 500
           SIC  L     A +  +     S L +  L  A LS   +AD  G+ +LHG+
Sbjct: 293 SICNLLIHPFGALIVGVMAGVISVLGYRFLTPAILSNLRIADTCGVHNLHGM 344


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 197  EMNKLSENINKITTFSSQILKISKAAVIMF 286
            E NK++E  N+I+ FS+ I K++ A  + F
Sbjct: 1046 ETNKIAEAFNRISRFSNWI-KMNLANALKF 1074


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +2

Query: 29   KCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNK 208
            K A  KQ  D  +   T++  +Q  +     E  N+  ++   V+ +++    + ++++K
Sbjct: 858  KVAECKQAFDSSS---TKADAMQKNVDRYT-EQINEITNSK--VKVLQTKINGLGKQIDK 911

Query: 209  LSENINKIT 235
            LS NI+K+T
Sbjct: 912  LSANISKLT 920


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,090
Number of Sequences: 2352
Number of extensions: 15914
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)