Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021037
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical ... 63 3e-10
AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical ... 63 3e-10
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 33 0.24
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 32 0.42
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 32 0.42
U64833-7|AAB04819.1| 254|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 29 4.0
U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical pr... 29 5.2
U50311-6|AAA92310.2| 496|Caenorhabditis elegans Cytochrome p450... 28 6.9
AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical ... 28 6.9
AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical ... 28 6.9
>AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical
protein B0414.8b protein.
Length = 585
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/72 (40%), Positives = 50/72 (69%)
Frame = +2
Query: 23 LLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEM 202
LL+ +L ++ +E E+V+ + L S++ +VYENYNKF++AT TVRK++ +F + EM
Sbjct: 21 LLREKSLDGLVKEEEEMVSAVRRLDSDVHQIVYENYNKFLTATNTVRKIQDEFTQLDSEM 80
Query: 203 NKLSENINKITT 238
LS +++ I+T
Sbjct: 81 KSLSRSMSTIST 92
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +1
Query: 616 VQRVVLT---NTCRCSV--L*LEHTDILDWVEKCNNTLLADLAIIISCYNEMFERK 768
VQ+V+LT + R + L H+D+LD V+K + + + +L +I + ++ +FE K
Sbjct: 212 VQKVLLTCSEQSLRVDLKELSANHSDVLDLVDKASESFIPNLTLIATTHDRLFEDK 267
>AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical
protein B0414.8a protein.
Length = 700
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/72 (40%), Positives = 50/72 (69%)
Frame = +2
Query: 23 LLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEM 202
LL+ +L ++ +E E+V+ + L S++ +VYENYNKF++AT TVRK++ +F + EM
Sbjct: 21 LLREKSLDGLVKEEEEMVSAVRRLDSDVHQIVYENYNKFLTATNTVRKIQDEFTQLDSEM 80
Query: 203 NKLSENINKITT 238
LS +++ I+T
Sbjct: 81 KSLSRSMSTIST 92
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +1
Query: 616 VQRVVLT---NTCRCSV--L*LEHTDILDWVEKCNNTLLADLAIIISCYNEMFERK 768
VQ+V+LT + R + L H+D+LD V+K + + + +L +I + ++ +FE K
Sbjct: 212 VQKVLLTCSEQSLRVDLKELSANHSDVLDLVDKASESFIPNLTLIATTHDRLFEDK 267
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Frame = +1
Query: 352 LNKAIAEGRYSDAVQ---DYSHAQRVLQKY--GNQPSFQSIQTECSEIIFELKKTLREDL 516
L+K +A+ ++ ++ YS R L+++ N P F S++T+C EI+ E EDL
Sbjct: 424 LDKKLAQRKHFPSINWLISYSEYMRALEEFYEKNYPEFVSLRTKCKEILQE-----EEDL 478
Query: 517 SVLIHL 534
S ++ L
Sbjct: 479 SEIVQL 484
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 149 TETVRKMRSDFKIMQEEMNKLSENINKITTFSSQILK 259
++T K+R+D KIM+E++ + N+ K+ T Q K
Sbjct: 576 SKTFHKLRNDKKIMEEDLRDVQLNVQKLETMQHQYRK 612
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 149 TETVRKMRSDFKIMQEEMNKLSENINKITTFSSQILK 259
++T K+R+D KIM+E++ + N+ K+ T Q K
Sbjct: 562 SKTFHKLRNDKKIMEEDLRDVQLNVQKLETMQHQYRK 598
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 149 TETVRKMRSDFKIMQEEMNKLSENINKITTFSSQILK 259
++T K+R+D KIM+E++ + N+ K+ T Q K
Sbjct: 562 SKTFHKLRNDKKIMEEDLRDVQLNVQKLETMQHQYRK 598
>U64833-7|AAB04819.1| 254|Caenorhabditis elegans Hypothetical
protein B0507.9 protein.
Length = 254
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +2
Query: 47 QVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQE---EMNKLSE 217
Q+ D I + L SE Q + +NY KF+ + + M + ++ E EMN+L E
Sbjct: 176 QISDFNKVIPNFKRILNSENQEIDPDNYEKFVDMKKRLFAMVNCLHLISEKRGEMNRLIE 235
Query: 218 NINKITTFSSQILKIS 265
++ Q L+IS
Sbjct: 236 EKMNLSMPQFQNLQIS 251
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 98 SEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINKITT 238
S + +++Y+ N+F +T+RK S+ K + ++ + IN + +
Sbjct: 207 STLTSVIYQALNQFSEQLQTIRKYVSNTKASESDLKYIQRLINSLNS 253
>U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical
protein F47C10.8 protein.
Length = 402
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 173 SDFKIMQEEMNKLSENINKITTFSSQILKISKAAVIMFDVCV 298
+D + +NK SE+ N +TT + K ++ D+C+
Sbjct: 359 ADLLSLSHVINKTSEDANSLTTLCQMYMPQVKLKKLLIDICI 400
>U50311-6|AAA92310.2| 496|Caenorhabditis elegans Cytochrome p450
family protein 33B1 protein.
Length = 496
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 59 KEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINK 229
K AEI+ + LQSE+ V N+F+ R +F ++ +N E + K
Sbjct: 157 KTAEILNEDFLLQSELDVAVGSVINQFLFGYRFDRSKLFEFTRIKTLVNNFMEEVGK 213
>AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical
protein K09F6.7 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 29 KC-ATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATET-VRKMRSDFKIMQEEM 202
KC +TL + + ++ + + + +Q + NK I + VRK+R +E
Sbjct: 121 KCVSTLSHLHHTKKSLIAEMEKSRELLQGRI-NRLNKTIGEIDQDVRKLRMSQIAFREGG 179
Query: 203 NKLSENINKITTFSSQI 253
N + N+ITTF S+I
Sbjct: 180 NNYQQKANEITTFYSRI 196
>AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical
protein Y18H1A.7 protein.
Length = 369
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 122 ENYNKFISATETVRKMRSDFKIMQEEMNKLSENINKITTFSSQILKISKAAV 277
E ++F +T +RK+ KI E++ + + + KI ++++ISK A+
Sbjct: 215 EKPSEFAKSTPKIRKLVEISKICSEKLPETANSTEKIALDFKKLVEISKIAL 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,723
Number of Sequences: 27780
Number of extensions: 353828
Number of successful extensions: 1091
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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