Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021037
         (813 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02030.1 68417.m00273 expressed protein                             67   1e-11
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp...    33   0.17 
At3g17480.1 68416.m02233 F-box family protein contains F-box dom...    29   2.8  
At5g18240.4 68418.m02143 myb family transcription factor contain...    29   4.9  
At5g18240.1 68418.m02140 myb family transcription factor contain...    29   4.9  
At3g10380.1 68416.m01244 exocyst complex component-related ident...    29   4.9  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    29   4.9  
At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containi...    28   6.4  
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m...    28   8.5  

>At4g02030.1 68417.m00273 expressed protein
          Length = 694

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/83 (33%), Positives = 56/83 (67%)
 Frame = +2

Query: 5   DVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFK 184
           D Y+D ++K + L+ ++ +  ++  + + L +++Q LVYENYNKFISAT+T+++M+S+  
Sbjct: 51  DQYMDLMIKKSNLEVLLQRHVQMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNIF 110

Query: 185 IMQEEMNKLSENINKITTFSSQI 253
            M+  M++L + I  + + S  +
Sbjct: 111 GMEGNMDQLLQKIMSVQSKSDGV 133



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = +1

Query: 280 NVRRLCGTRXXXXXXXXXXXXPSQLNKAIAEGRYSDAVQDYSHAQRVLQKYGNQPSFQSI 459
           ++ +L  TR            P++L K I    Y DAV+ Y+ A  +L+ YG+  SFQ  
Sbjct: 143 HIEKLHRTRNLLRKVQFIYDLPARLQKCIKSEAYGDAVRFYTGAMPILKVYGD-TSFQDC 201

Query: 460 QTECSEIIFELKKTLREDL 516
           +    E I  + K L+  L
Sbjct: 202 RRASEEAIEIIIKNLQTKL 220


>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           similar to SP|Q96MW5 Conserved oligomeric Golgi complex
           component 8 {Homo sapiens}; contains Pfam profile
           PF04124: Dor1-like family
          Length = 569

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 53  MDKEAEIV-TQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINK 229
           + KE E++   ++ +Q +MQ +   NY  FI+A + +  +R +   + + +  L   + K
Sbjct: 40  LHKEPELLRVDAERIQRQMQEVAVGNYRAFITAADALLAIRQEVSSIDKHLESLIGEVPK 99

Query: 230 ITTFSSQIL 256
           +T+  ++ +
Sbjct: 100 LTSGCTEFI 108


>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 373

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 793 LSANSGMIASFRTFHCNRIL**LNQPTM 710
           L  NSG + SF  FHCN +L   N  T+
Sbjct: 98  LLCNSGKVESFEVFHCNGLLLFTNTSTI 125


>At5g18240.4 68418.m02143 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 397 DYSHAQRVLQKYGNQPSFQSIQTECSEIIFELKKTLREDLSVLIHLQLNL 546
           D SH++ +    G QPS     ++  ++  E+++ L E L V  HLQL +
Sbjct: 128 DESHSESL--SIGPQPSMNLPISDALQMQIEVQRRLHEQLEVQRHLQLRI 175


>At5g18240.1 68418.m02140 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 397 DYSHAQRVLQKYGNQPSFQSIQTECSEIIFELKKTLREDLSVLIHLQLNL 546
           D SH++ +    G QPS     ++  ++  E+++ L E L V  HLQL +
Sbjct: 128 DESHSESL--SIGPQPSMNLPISDALQMQIEVQRRLHEQLEVQRHLQLRI 175


>At3g10380.1 68416.m01244 exocyst complex component-related
           identical to Probable exocyst complex component Sec8
           (Swiss-Prot:Q93YU5) [Arabidopsis thaliana]; weak
           similarity to Exocyst complex component Sec8 (rSec8)
           (Swiss-Prot:Q62824) [Rattus norvegicus]
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +1

Query: 343 PSQLNKAIAEGRYSDAVQDYSHAQRVLQKYGNQP--SFQSIQTECSEIIFELKKTLREDL 516
           PS++ K IA+ ++  A+Q Y  +  +L++ G Q   + Q +++E +++   L   + +DL
Sbjct: 145 PSRIEKLIADKQFYAAIQVYLQSSLMLEREGLQTVGALQDVRSELTKLRGALFFKILDDL 204


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +2

Query: 26  LKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMN 205
           L+C  LK  +++E     + +    E Q  + EN N F++ ++  R    DF I ++  +
Sbjct: 379 LECERLKTQLEEEKRKQKEQENCIKEQQMKI-ENLNNFVTNSDFKRNQSEDFIISRKTPD 437

Query: 206 KLSENIN 226
            L  N+N
Sbjct: 438 GLC-NVN 443


>At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = -3

Query: 616 QLRNISCKDESLSWSCLKRATLSASSVADVLGLISLHGVSSSVQI*FLNTQSVCFGMKAD 437
           +++   CK + ++++ +      A  V ++LG++S      SV +  +   +V  GM+  
Sbjct: 202 EMKEWECKPDVITYNSVLDILGRAGLVNEILGVLSTMKEDCSVSVNIITYNTVLNGMRKA 261

Query: 436 CHIFGVLAEHVNSLVQ 389
           C  F +     N +VQ
Sbjct: 262 CR-FDMCLVIYNEMVQ 276


>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
           myosin heavy chain (GI:4249703) [Rana catesbeiana];
           similar to smooth muscle myosin heavy chain SM2
           (GI:2352945) [Homo sapiens]
          Length = 476

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +2

Query: 41  LKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSEN 220
           +K +MD+   +  + + L+S+      +   K    TET  +++S  +  +EE N+LSE 
Sbjct: 91  VKGLMDQVNGMKHELESLRSQKDESEAKLEKKVEEVTETKMQLKSLKEETEEERNRLSEE 150

Query: 221 INKI 232
           I+++
Sbjct: 151 IDQL 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,804,722
Number of Sequences: 28952
Number of extensions: 305551
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)