Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021036
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 234 NRKP*PS---LQKLDSEVRRYGRITKRDIDEVLDEIQSKND 347
           NRKP  +   L++L+  + + G  + +  +  +DE+  K+D
Sbjct: 137 NRKPDDNQDHLRRLEMSLEKSGLFSSKTSEHSVDELSGKSD 177


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 413 RTKNLTCTENMECFNRKRNRNGHLS 487
           RT  + C+E+   F  KR RNG  S
Sbjct: 359 RTGFIICSESNRKFYFKRARNGTFS 383


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 641 ATKVLEKMRELS 676
           ATK LEKM ELS
Sbjct: 324 ATKALEKMSELS 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,601
Number of Sequences: 336
Number of extensions: 3694
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)