Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021036
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.23
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S... 30 0.31
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 29 0.54
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.94
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 26 6.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 6.6
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.6
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 26 6.6
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 8.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 8.7
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.7 bits (66), Expect = 0.23
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Frame = +3
Query: 294 ITKRDIDEVLDEIQSKNDITS--SQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTERG 467
ITK+DID +L+ D+T QS ++R + +E T L W VL
Sbjct: 173 ITKKDIDNLLEPYGEVEDVTEIPDQSAFLVRF---VYRDEAIAAYTALKHSAWPVLWAEN 229
Query: 468 IAMDISHYNALLRVTLK-TNIHSRLHSS 548
+ HY N HSR S
Sbjct: 230 VTYQNGHYKKKGSSPFSPPNAHSRRRKS 257
>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +3
Query: 267 DSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEE 407
D +R++GR+ K E++D ++ N + + + + C E++ E
Sbjct: 101 DELIRKFGRLEKETELELMDIAKTANSLQPGWNQFIFQTCNEIIENE 147
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 29.5 bits (63), Expect = 0.54
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Frame = +3
Query: 330 IQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRV 509
IQ+KN I QS++ + + E+ TL++Q +W ++ +Y ++
Sbjct: 838 IQTKNSILKVQSIIRGFLLRQTLEEKTKHDATLIIQSLWLTFKAHKHYKELQYYAVRIQS 897
Query: 510 TLKTNIHSRLHSSL--QNLKIKDYSQIGSPIRDSCGVIAKREMSREQ 644
+ + R + L ++ K Q+ + I+K+ + EQ
Sbjct: 898 LWRMKLAKRQLTELKIESTKASHLKQVSYRLESRLFEISKQLDNSEQ 944
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 28.7 bits (61), Expect = 0.94
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 306 DIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKI 443
D+D L ++Q DI S+ +LV G+ V + LPE ++QKI
Sbjct: 192 DVDRTLIQVQQTFDIPMSKPILVSSKTGKNVEQILPE----IIQKI 233
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 6.6
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +3
Query: 285 YGRITKRDIDEVLDEI-QSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTE 461
Y + + + ++L +I + + DI S+Q +L C E P E L +K+ +L +
Sbjct: 125 YVEVERARLTQLLSQIKEEQGDIKSAQEIL----CNE--PVETYGSFDLK-EKVAFILDQ 177
Query: 462 RGIAMDISHYNALLRVTLKTNIHSRLHSSLQNLKIKDYSQ 581
+ + S Y T K N+ +Q+LK+K Y Q
Sbjct: 178 VRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLKLKYYEQ 217
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 485 SLQCIV-ESYIENQHPFSPAQFLTELENKGLQPNRVTYQRLMWR 613
SL C++ E Y+ + ELE GL+P+R TY + R
Sbjct: 142 SLVCLLAEIYVPPANRVWYPDDAAELEETGLRPSRFTYANIFSR 185
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 557 LENKGLQPNRVTYQRLMWRYC 619
++ GL+P VTY+ L+ YC
Sbjct: 392 IDKYGLKPTHVTYRSLLKAYC 412
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 6.6
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +3
Query: 285 YGRITKRDIDEVLDEI-QSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTE 461
Y + + + ++L +I + + DI S+Q +L C E P E L +K+ +L +
Sbjct: 125 YVEVERARLTQLLSQIKEEQGDIKSAQEIL----CNE--PVETYGSFDLK-EKVAFILDQ 177
Query: 462 RGIAMDISHYNALLRVTLKTNIHSRLHSSLQNLKIKDYSQ 581
+ + S Y T K N+ +Q+LK+K Y Q
Sbjct: 178 VRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLKLKYYEQ 217
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 554 ELENKGLQPNRVTYQRLMWRYCQEGDVEGATKV 652
+ + +QP+ +T +R+ RY Q+G+ T V
Sbjct: 363 QAQGSSIQPSEITGRRVPHRYAQDGNTLPYTPV 395
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 747 APSVSPWNA*PRTKAFRTGSETGMLSSLIFSSTLVAPSTSPS 622
APS S A P K TG + SS + + + PS SPS
Sbjct: 139 APSPSDVRAFPIHKNASTGVKRSFFSSSMSNGAMSPPSHSPS 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,425
Number of Sequences: 5004
Number of extensions: 61089
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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