Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021035
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0710 + 19660895-19661004,19661571-19661682,19661808-196618... 37 0.022
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 35 0.089
07_01_0516 - 3850252-3852870 32 0.62
09_02_0603 - 11150739-11150746,11150791-11151340 31 0.82
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 31 1.4
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 31 1.4
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 3.3
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 29 3.3
06_03_1310 + 29238644-29240260 29 4.4
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 5.8
09_04_0755 - 19948942-19949088,19949249-19949396,19949512-199496... 29 5.8
09_02_0369 - 8012470-8013120 29 5.8
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 28 7.7
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 7.7
04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745... 28 7.7
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 7.7
>09_04_0710 +
19660895-19661004,19661571-19661682,19661808-19661879,
19661964-19662184,19662272-19662377
Length = 206
Score = 36.7 bits (81), Expect = 0.022
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 274 EGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVR----AQPN 441
+G +YL+ RM++ + K +F P + + QP+F N I G V N
Sbjct: 46 KGTIYLSNIRMVFVASKPVGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPENQN 105
Query: 442 GNFIGEVKFKLTFKSGG 492
FK+ FK GG
Sbjct: 106 RALYSTHTFKILFKEGG 122
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 34.7 bits (76), Expect = 0.089
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPG 731
PPY+++P PP +S++ N PPP PG
Sbjct: 440 PPYASYPPPPPGSSMY--NPPPPAPG 463
>07_01_0516 - 3850252-3852870
Length = 872
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
PP P QPPP S + PPP P G S P
Sbjct: 10 PPPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPP 42
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +3
Query: 651 VPPYSAFPDQPPPNSVFV----SNTPPPYP 728
+PP FP PPP S FV S PPP P
Sbjct: 37 LPPPFGFPPPPPPGSTFVPLPQSGVPPPPP 66
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +3
Query: 657 PYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
P A P PPP V V PP Y GV YP
Sbjct: 80 PLGAPPPPPPPQQVQVQ-VPPQYGGVPNPGYP 110
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVT 737
PP+ A P P PN VS+ PPP P VT
Sbjct: 4 PPHDASPAPPNPNP--VSDDPPPPPPVT 29
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 657 PYSAFPDQPPPNSVFVSNTPPPYP 728
PY+++P PP N V N PPP+P
Sbjct: 488 PYNSYPVFPPMNYPMV-NIPPPFP 510
>01_06_0319 - 28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 248 HSHRIQLTHCQKTR*CIPLRVSKLRDRRERYLKT*CNYCADYI 120
H + HC K C+ +++++ + R E+ L+T C C D++
Sbjct: 1042 HGLGVDFFHCMKCNCCLGMKLTEHKCR-EKGLETNCPICCDFL 1083
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 651 VPPYSAFPDQPPPNSVFVSNTPPPYP 728
+PP P PPP+S S+ PPP P
Sbjct: 389 MPPRRTPPTPPPPSSPTPSHLPPPPP 414
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 494 APPDLKVSLNLTSPIKLPLGWARTL 420
APP V+L L+ +K P GW +TL
Sbjct: 913 APPRYLVALELSGMLKKPPGWIKTL 937
>09_04_0755 -
19948942-19949088,19949249-19949396,19949512-19949648,
19949933-19949995,19950175-19950288,19951410-19951514,
19951794-19951853,19952604-19952639,19953176-19953467,
19954168-19954253,19954641-19954901
Length = 482
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 418 GKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQ 510
G+ RA P G GE+ F SGG I +G+
Sbjct: 69 GRRRASPAGALSGEMPASAAFVSGGIISWGK 99
>09_02_0369 - 8012470-8013120
Length = 216
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 654 PPYSAFPDQPPPNSVFVSNTPPP 722
PP+ P +PPP F++ PPP
Sbjct: 43 PPHDDPPLKPPPQQQFITAQPPP 65
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 509 CPYSIAPPDLKVSLNLTS-----PIKLPLGWARTLPFIQLAEN 396
C YS + P L +LNL+S P+ L G ++L ++ L+ N
Sbjct: 445 CGYSSSDPALVTALNLSSSVLIGPVNLSFGDLKSLQYLDLSNN 487
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYP 728
P + P PPP+S S+ PPP P
Sbjct: 78 PALAPTPTPPPPSSTASSSLPPPTP 102
>04_03_0808 -
19872656-19873165,19873251-19873583,19874443-19874543,
19874628-19874853,19874941-19875079,19875339-19875451,
19875628-19875911,19876287-19876326
Length = 581
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 125 NQHNNCIMSLNTAHADH--GVLIHAGECIILFSDNVSVEFYGNDTQSLRGS 271
++H N + + A AD+ L H GE +I+F ++ Y D+ S+ G+
Sbjct: 404 DEHYNGYIEDHKADADYFNKPLAHYGEMLIIFGSTMATGKYAKDSSSVLGT 454
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 663 SAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
S+ P +PPP S + PP P VT A P
Sbjct: 66 SSRPPRPPPPSTTTAPPPPAAPAVTPARPP 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,833,501
Number of Sequences: 37544
Number of extensions: 438212
Number of successful extensions: 1810
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1770
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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