Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021035
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.64 
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               31   1.5  
SB_51054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33)                29   3.4  
SB_38454| Best HMM Match : DCX (HMM E-Value=4.2)                       29   4.5  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)                    29   5.9  
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)         28   7.8  

>SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP +A P  PPPN+  +   PPP   + G   P
Sbjct: 14  PPNTAIPGDPPPNTT-IPRAPPPNTAIPGDRPP 45



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPP--PYPG 731
           PP +  P  PPPN+    N PP  P PG
Sbjct: 74  PPNTPIPGDPPPNTPIPGNPPPNTPIPG 101



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP +A P  PPPN+  +   PPP   +  A  P
Sbjct: 4   PPNTAIPGDPPPNTA-IPGDPPPNTTIPRAPPP 35



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPP--PYPG 731
           PP +  P  PPPN     N PP  P PG
Sbjct: 44  PPNTPIPGDPPPNIPIPGNPPPNTPIPG 71



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPP--PYPG 731
           PP +  P  PPPN+    + PP  P PG
Sbjct: 24  PPNTTIPRAPPPNTAIPGDRPPNTPIPG 51



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPP--PYPG 731
           PP +  P  PPPN+    + PP  P PG
Sbjct: 64  PPNTPIPGDPPPNTPIPGDPPPNTPIPG 91



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPP--PYPG 731
           PP +  P  PPPN+    + PP  P PG
Sbjct: 84  PPNTPIPGNPPPNTPIPGDPPPNTPIPG 111


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP   +P  PPPN+ +     PPYP    A YP
Sbjct: 111 PPNPPYP--PPPNAPYPPPPNPPYPPPPNAPYP 141



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           P Y   P+ PPPN+ +    PPPYP      YP
Sbjct: 159 PLYPPPPNPPPPNAPY---PPPPYPPPPNPPYP 188



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 657 PYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PY   P  PPPN  +     PPYP    A  P
Sbjct: 173 PYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNP 204



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP + +P  PPPN  +      PYP    A YP
Sbjct: 119 PPNAPYP--PPPNPPYPPPPNAPYPPSPNAPYP 149


>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 343

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 651 VPPYSAFPDQPPPNSVFVSNTPPPYPGVTGA 743
           +PP++A P+Q PPN+      P P+P V  A
Sbjct: 144 IPPWTA-PEQEPPNNTPPWTAPEPFPPVDSA 173


>SB_51054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 651 VPPYSAFPDQPPPNSVFVSNTPPPYPGVTGA 743
           +PP++A P+Q PPN       P P+P V  A
Sbjct: 67  IPPWTA-PEQEPPNHTPPWTAPEPFPPVDSA 96


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 654  PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
            PP  + P QPPP      N PPP P   G++ P
Sbjct: 936  PPGGSAPSQPPPPG---GNAPPPPPPPGGSAPP 965


>SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33)
          Length = 292

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 719 SLPWRDWSFLSDRPWVFRGWWGLWVP 796
           ++P+ DW+  S+ PW   G +GLW P
Sbjct: 111 TIPYWDWTLTSNNPW-NDGEFGLWSP 135


>SB_38454| Best HMM Match : DCX (HMM E-Value=4.2)
          Length = 239

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 798 PGTHKPHHPRKTQGRSDKKLQSRQG 724
           P   KP H RK   RSD+K+ S  G
Sbjct: 77  PNRTKPSHGRKNSDRSDRKMSSTTG 101


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP S  P  PPP ++  +  PPP P  T A  P
Sbjct: 322 PPPSQAP--PPPKTIPSTLPPPPVPSATSAPPP 352


>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
          Length = 117

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 HADHGVLIHAGECIILFSDNVSVEFYGNDT 253
           H D  V++H G+C+I   D  +V   G  T
Sbjct: 27  HDDQCVIVHGGQCMIAHGDRCTVSHSGRCT 56


>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 651 VPPYSAFPDQP----PPNSVFVSNTPPPYPGVTGASYPT 755
           +PP +A P  P    PP +   +  PPP P  T A  PT
Sbjct: 211 LPPTAAPPPPPTTGAPPPTPVTNKPPPPRPATTQAPPPT 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,117,169
Number of Sequences: 59808
Number of extensions: 506838
Number of successful extensions: 1866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)