Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021035
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 651 VPPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPT 755
           +PP +  P  P PN   +S   PP P + G S PT
Sbjct: 409 LPPSAGAPMPPIPNMSNMSGM-PPLPNMPG-SMPT 441


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -3

Query: 801 LPGTHKPHHPRKTQGR---SDKKLQSRQG 724
           +PG H  H P++T+ R    D K  S+ G
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSKGG 365


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -3

Query: 801 LPGTHKPHHPRKTQGR---SDKKLQSRQG 724
           +PG H  H P++T+ R    D K  S+ G
Sbjct: 337 VPGDHGDHAPKQTEVRFKVHDPKAHSKGG 365


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 438 RLGTNFTFYTVGREHRLFHSYILQCNKRKTE*SHGICI 325
           R  T++T Y      + FH       +R+ E +H +C+
Sbjct: 10  RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,181
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)