Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021034
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 130 3e-31
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 69 1e-12
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 57 3e-09
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 55 1e-08
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 55 1e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 2e-06
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 47 3e-06
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 38 0.002
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 33 0.051
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 3.3
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 4.4
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 7.7
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 7.7
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 130 bits (313), Expect = 3e-31
Identities = 56/84 (66%), Positives = 76/84 (90%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH+DFT+EVERALRVLDGA+LVLC+V GVQSQT+TV+RQM+RYNVP ++F+NK+DR+GA
Sbjct: 153 PGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGA 212
Query: 183 NPERVLKQMRSKLKHNAAFIHLPI 254
+P +V++Q+ +KLK AA + +PI
Sbjct: 213 DPWKVIQQINTKLKIPAAAVQIPI 236
Score = 109 bits (263), Expect = 4e-25
Identities = 60/111 (54%), Positives = 75/111 (67%)
Frame = +1
Query: 511 FTPVLLGTALKNKGIQPLLDAVLTYLPHPGEVENTALLNESKDGEGQTIVLDPTRDNKKP 690
FTPVL+G+AL N G+Q +LDAV YLP+P EVEN AL + D E + + L P+ ++KP
Sbjct: 324 FTPVLMGSALSNVGVQSVLDAVCDYLPNPSEVENIAL--NAADSE-KPVSLVPS--SEKP 378
Query: 691 FVGLAFKLEVSQFGQLTYLRCYPGC*REVTIYSTPGLTKKVKISRLVRMHS 843
V LAFKLE +FGQLTYLR Y G + TKK+K+SRLVRMHS
Sbjct: 379 LVALAFKLEEGRFGQLTYLRIYQGTLKRGNYIYNVNSTKKIKVSRLVRMHS 429
Score = 65.7 bits (153), Expect = 8e-12
Identities = 30/84 (35%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 EKECQGILDLVEEKAIYFDGEYGEHVRLDE-IPQDRRTEVKERRHELIEHLSNVDETLGE 436
E + +G++DL++ +AIY G GE + + + +P++ KE+R LIE L+++DE + +
Sbjct: 239 EDKLEGVVDLIQMRAIYNRGSKGEKIEISQQVPENLIELAKEKRSALIEKLADLDEEIAD 298
Query: 437 LFLEEKTPTVNDLKQALRRSTLKR 508
+++ E+ PT L A+RR+TL R
Sbjct: 299 IYVMEEDPTPEQLMGAIRRTTLAR 322
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 68.5 bits (160), Expect = 1e-12
Identities = 29/73 (39%), Positives = 49/73 (67%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH DFT EVER++ VLDGA+ ++ GV++QT V +Q + +P + F+NK+DR+G+
Sbjct: 101 PGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGIPKVIFVNKMDRVGS 160
Query: 183 NPERVLKQMRSKL 221
+ ++ + + L
Sbjct: 161 SLGSTIRSIYTNL 173
Score = 49.6 bits (113), Expect = 5e-07
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Frame = +1
Query: 499 IKTTFTPVLLGTALKNKGIQPLLDAVLTYLPHPGEVENTALLNESKDGEGQTIV-LDPTR 675
I PVL G++LKN +QP++DA++ YLP P E N SK+ I+ LD
Sbjct: 281 ISGNVVPVLCGSSLKNIAVQPIMDAIIDYLPSPVEFYEK---NASKETSSDKIISLD--- 334
Query: 676 DNKKPFVGLAFK-LEVSQFGQLTYLRCYPGC*REVTIYSTPGLTKKVKISRL 828
K+P + FK + + G LTY+R G + P K + RL
Sbjct: 335 --KRPLLAKIFKVIHHASRGILTYVRVNEGTLSRGMMMFNPRTKKSERAIRL 384
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Frame = +2
Query: 260 EKECQGILDLVEEKAIYFD------GEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVD 421
E++ GILD++++K I +D G G HV+ IP+ E R+ L+ L +VD
Sbjct: 192 ERKFLGILDILQQKMILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD 251
Query: 422 ETLGELFLEEK 454
ETL + +LE +
Sbjct: 252 ETLCDEYLENE 262
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 57.2 bits (132), Expect = 3e-09
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGHVDF+ EV A R+ DGA +++ +V GV SQT+TV RQ + + INK+DRL
Sbjct: 102 PGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRL 159
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 55.2 bits (127), Expect = 1e-08
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDR 173
PGHVDF+ EV ALRV DGA++V+ ++ GV QT TV RQ + + +NK+DR
Sbjct: 106 PGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDR 162
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 55.2 bits (127), Expect = 1e-08
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDR 173
PGHVDF+ EV ALRV DGA++V+ ++ GV QT TV RQ + + +NK+DR
Sbjct: 106 PGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDR 162
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 48.0 bits (109), Expect = 2e-06
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHVDF EV +L +G IL++ + G+Q+QTL+ N+ + +NK+D A
Sbjct: 132 PGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKVDLPTA 191
Query: 183 NPERVLKQMR 212
+ +R L Q++
Sbjct: 192 DVDRTLIQVQ 201
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGHVDF EV + + DG +LV+ + GV T + + +++P + +NK+DRL
Sbjct: 217 PGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRL 274
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGH FT R + + AILV+ + G++ QT+ R ++ P + +NK+DRL
Sbjct: 557 PGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFVVALNKVDRL 614
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 33.1 bits (72), Expect = 0.051
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQT---LTVNRQMKRYNVPCLAFINKLDR 173
PGH D+ + +DGAI+V+ + G QT L + RQ+ + + +INK+D
Sbjct: 124 PGHADYIKNMITGAATMDGAIIVVSATDGQMPQTREHLLLARQVGVKQI--VVYINKVDM 181
Query: 174 LGANP-ERVLKQMRSKL 221
+ + E V +MR L
Sbjct: 182 VEPDMIELVEMEMRELL 198
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 87 GVQSQTLTVNRQMKRYNVPCLAFINKLDRLGANPERVLKQMRSKLK 224
G + V+ Q K+YN+ F+ KL + G N + + ++M+ L+
Sbjct: 212 GKAKEQKIVSEQSKKYNMFEEGFLAKLHKPGGNTQLIPERMKEHLQ 257
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 88 PPTEHNTNIAPSKTLNALSTSTVKS 14
PPTE + ++APS + +A ST + KS
Sbjct: 15 PPTESSAHLAPSFSDSATSTLSFKS 39
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 7.7
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -3
Query: 677 SLVGSNTMVWPSPSLLSFNKAVFSTSPGCGRYVSTASSKG*IPLFFRAVPRSTGVNVVL 501
SLV S T+ SPS +S ++ S S VST+S F V ST L
Sbjct: 129 SLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSSGFSTVLSSTNTTSAL 187
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 214 ERICFSTLSGLAPNLSSLLIN 152
+R FS L +A N+SSLL+N
Sbjct: 151 DRSTFSCLCAIAENISSLLVN 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,653,931
Number of Sequences: 5004
Number of extensions: 79277
Number of successful extensions: 245
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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