Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021034
(844 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08) 83 2e-16
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 59 5e-09
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 58 9e-09
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 44 2e-04
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 41 0.001
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 38 0.008
SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08) 33 0.29
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 30 2.7
SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065) 30 2.7
SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14) 30 2.7
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43) 30 2.7
SB_49596| Best HMM Match : HTH_psq (HMM E-Value=7.8) 29 3.6
SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012) 29 3.6
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 29 3.6
SB_9509| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_4296| Best HMM Match : DUF1040 (HMM E-Value=0.24) 29 6.2
SB_25967| Best HMM Match : SapB_1 (HMM E-Value=2.6) 29 6.2
>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
Length = 926
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/84 (47%), Positives = 59/84 (70%)
Frame = +2
Query: 257 LEKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGE 436
LE G++D++ KA YFDG+ GE VR D IP+D E ++RR ELIE +++VD LG+
Sbjct: 676 LEGNNTGVVDIIRWKAYYFDGDNGEIVREDVIPEDMVDECRKRRQELIEVVADVDPELGD 735
Query: 437 LFLEEKTPTVNDLKQALRRSTLKR 508
LFLEE P+ + + A+RR+T++R
Sbjct: 736 LFLEEVKPSESQIIAAIRRATIER 759
Score = 81.8 bits (193), Expect = 6e-16
Identities = 49/122 (40%), Positives = 69/122 (56%)
Frame = +1
Query: 478 ASITAFHIKTTFTPVLLGTALKNKGIQPLLDAVLTYLPHPGEVENTALLNESKDGEGQTI 657
A+I I+ TFTPV +G+ALKNKG+Q + + G+ T + D + +
Sbjct: 750 AAIRRATIERTFTPVFVGSALKNKGVQVPHQIDKSSFSY-GKTYATIDSDFCLDTK---V 805
Query: 658 VLDPTRDNKKPFVGLAFKLEVSQFGQLTYLRCYPGC*REVTIYSTPGLTKKVKISRLVRM 837
++D R + PFVGLAFKLE ++GQLTYLR Y G + K+VK+ R+VRM
Sbjct: 806 LMDSRRSGEAPFVGLAFKLEAGRYGQLTYLRVYQGALKRGGFIVNTRTGKRVKVPRIVRM 865
Query: 838 HS 843
HS
Sbjct: 866 HS 867
Score = 66.9 bits (156), Expect = 2e-11
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = +3
Query: 90 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGANPERVLKQMRSKLKHNAAFIHLPIA*KKS 269
+QSQTLTVNRQMKRYNVPC+AFINKLDR +KL HNAA + LP+ + +
Sbjct: 633 IQSQTLTVNRQMKRYNVPCIAFINKLDR-------------AKLNHNAALLQLPVGLEGN 679
Query: 270 VKEFWTLLRRKLY 308
++R K Y
Sbjct: 680 NTGVVDIIRWKAY 692
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 58.8 bits (136), Expect = 5e-09
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH DF + R L +D I+V+ GV+ QT + + N+P + FINK+DR G
Sbjct: 87 PGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDREGK 146
Query: 183 NPERVLKQMRSKLKHNAAFIHLPIA*KKSVKEFWTLLRRKLYILM-VNMASMCGSMRFHK 359
+ +L ++ KLK + PI K + + + + + + + ++ F+
Sbjct: 147 DAFDLLDEVEQKLKLTVCPLSFPIGMGYDFKGIYNIWEKNINLFSGDSRKDIEDTIAFND 206
Query: 360 IVEPKL 377
I P+L
Sbjct: 207 ITNPEL 212
Score = 34.7 bits (76), Expect = 0.095
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 496 HIKTTFTPVLLGTALKNKGIQPLLDAVLTYLPHPGEVE-NTALLNESKD 639
++ T PV G+AL N G++ LLD + P P E +T L++ ++D
Sbjct: 243 YLNGTLQPVFFGSALNNFGVRELLDCFIDIAPTPRPKESDTRLIDPNED 291
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 58.0 bits (134), Expect = 9e-09
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDR 173
PGHVDF+ EV ALRV DGA++V+ V GV QT TV RQ + + F+NK+DR
Sbjct: 107 PGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 163
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 46.0 bits (104), Expect = 4e-05
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +3
Query: 6 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGAN 185
GHVDF+ EV R+L G +L++ + GVQ+QT++ + + +NK+D A
Sbjct: 1995 GHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKIDLKTAK 2054
Query: 186 PERVLKQMRSKLKHNAAFIHLPIA*KKSVKEF-WTLLRRKLYILMVNMASM 335
+ V+ QM N I A V + + LR L L +N AS+
Sbjct: 2055 SDEVIHQMERLFDINQQDILKVYAGVYPVDQSEYVFLRNALEKLTLNDASV 2105
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH FT R +V D I+V+ + V QT + VP + INK+D+ A
Sbjct: 146 PGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINKIDKPNA 205
Query: 183 NPERVLKQM 209
NP+ + Q+
Sbjct: 206 NPDNIKTQL 214
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 27 EVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNV-PCLAFINKLDRL 176
+V A+R+ DGA++V+ V GV QT V RQ N+ PCL +NK+DRL
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLV-LNKIDRL 142
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 27 EVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNV-PCLAFINKLDRL 176
+V A+R+ DGA++V+ V GV QT V RQ N+ PCL +NK+DRL
Sbjct: 23 KVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLV-LNKIDRL 72
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 38.3 bits (85), Expect = 0.008
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGH F+ R + D AILV+ + G++ QT+ +K+ P + +NK+DRL
Sbjct: 686 PGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQTIESINLLKKRKTPFVVALNKVDRL 743
>SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08)
Length = 313
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -3
Query: 722 LTSNLNAKPTNGFLLSLVGSNTMVWPSPSLL---SFNKAVFSTSPGCGRYVSTASSKG*I 552
+TS+LNAK T+G+L +L M PS + S + V S P G T +S I
Sbjct: 164 MTSSLNAKLTDGYLGNLKAQVAMATPSNTGAREGSDSATVGSVGPAHGEGACTTNSDQFI 223
Query: 551 PLFFRAVPRSTG 516
P + AV +G
Sbjct: 224 PTEYAAVLEKSG 235
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 492 RRNACLRSLTVGVFSSRNNSPNVSSTFERCSINSC 388
RR C S V V ++PN +T+ERC++ C
Sbjct: 26 RRVTCADSRGVAVAERLCDAPNRPATYERCNVKPC 60
>SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065)
Length = 422
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 395 LIEHL--SNVDETLGELFLEEKTPTVNDLKQALRRSTLKRHSLQC 523
L++HL S D LGE LEE P + DL A + R + C
Sbjct: 144 LVQHLLASTTDPDLGEEILEELLPEIEDLLAAGHDGVIARMAESC 188
>SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)
Length = 441
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 245 STNCLEKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHL 409
S + L C I+ + +K Y+ G Y +V+ E ++ + + R + I+H+
Sbjct: 170 SQDFLNGVCTNIIHMALKKLTYYGGNYDSYVKTREELEENQMKQYNREQDQIKHM 224
>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 1176
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 314 DGEYGEHVRL---DEIPQDRRTEVKERRHELIEHLSNVDETLGELFLEEK 454
DG EH+ L + Q+R + + EL E S +DETL E LE +
Sbjct: 258 DGVINEHINLPRSETTNQERLRAIDRKNEELSERNSVIDETLEENQLERE 307
>SB_49596| Best HMM Match : HTH_psq (HMM E-Value=7.8)
Length = 147
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +2
Query: 356 QDRRTEVKERRHELIEHLSNVDETLGELFLEEKTPTVNDLKQALRRSTLKRHSL 517
+D+R E KER H+L L+ +D+T + + + ++ KQ L +T+K L
Sbjct: 51 RDKRREHKERVHKLSLALATLDQTRKDAIIIK--DVISQTKQQLEVATIKSDDL 102
>SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012)
Length = 1119
Score = 29.5 bits (63), Expect = 3.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 326 GEHVRLDEIPQDRRTEVKERRHE 394
G HV++DE+P +R ++ + R+ E
Sbjct: 621 GVHVKVDEVPSERESDAERRKRE 643
Score = 29.5 bits (63), Expect = 3.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 326 GEHVRLDEIPQDRRTEVKERRHE 394
G HV++DE+P +R ++ + R+ E
Sbjct: 1093 GVHVKVDEVPSERESDAERRKRE 1115
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +2
Query: 356 QDRRTEVKERRHELIEHLSNVDETLGELFLEEKTPTVNDLKQALRRSTLKRHSL 517
+D+R E KER H+L L+ +D+T + + + ++ KQ L +T+K L
Sbjct: 1249 RDKRREHKERVHKLSLALATLDQTRKDAIIIK--DVISQTKQQLEVATIKSDDL 1300
>SB_9509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 371 EVKERRHELIEHLSNVDETL---GELFLEEKTPTVNDLKQALRRSTLKRHSLQCF 526
E + + E + H S DET L L+ T V LKQ+L R++ H CF
Sbjct: 67 EGEYQNKEKVIHNSRKDETAQTDARLMLKNFTRDVGSLKQSLLRASSSYHMYPCF 121
>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 199 STLSGLAPNLSSLLINARHGTLYRFICLL 113
S +SG NL+S+ HG Y + CLL
Sbjct: 21 SGVSGTTANLASIAPQCSHGAPYHYFCLL 49
>SB_4296| Best HMM Match : DUF1040 (HMM E-Value=0.24)
Length = 227
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 257 LEKECQGILDLVEEKAIYFDGEYGEHVRLDEIP----QDRRTEVKERRHELIEHLSNVDE 424
+EKEC G+L + + EH L+EI DR++E + R +L + SNVD+
Sbjct: 5 IEKECNGVLFCHKSEF------RKEHCVLEEIQIKADNDRKSERQNLRQQLGKIRSNVDK 58
Query: 425 TLGELFLEEKTPT-VNDLKQAL 487
EL + +P V LK+ +
Sbjct: 59 FQRELMDVKASPAFVQKLKEMM 80
>SB_25967| Best HMM Match : SapB_1 (HMM E-Value=2.6)
Length = 140
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 236 IYTSTNCLEKECQGILDLVEEKAIYFDGE 322
I + N LEK+CQ I D+V+E+ I D E
Sbjct: 57 IQNTLNTLEKDCQKISDIVDER-IEIDAE 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,669,558
Number of Sequences: 59808
Number of extensions: 563396
Number of successful extensions: 1448
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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