Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021034
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    40   4e-05
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   3.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 3   PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDR 173
           PGH  F     R   + D  +LV+ +  GV+ QTL      K   VP +  INK+D+
Sbjct: 201 PGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVPIIVAINKIDK 257


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 347 EIPQDRRTEVKERRHELIEHLSN 415
           E  +DR+   K + H++I  LSN
Sbjct: 65  ERSRDRKEREKSKEHKIISSLSN 87


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 347 EIPQDRRTEVKERRHELIEHLSN 415
           E  +DR+   K + H++I  LSN
Sbjct: 65  ERSRDRKEREKSKEHKIISSLSN 87


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 347 EIPQDRRTEVKERRHELIEHLSN 415
           E  +DR+   K + H++I  LSN
Sbjct: 65  ERSRDRKEREKSKEHKIISSLSN 87


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 260 EKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGE 436
           +K  + ILD +++K   F     + V L + P+D    V          L   DE LGE
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRVLS-MDGYQNILDKKDELLGE 177


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 260 EKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGE 436
           +K  + ILD +++K   F     + V L + P+D    V          L   DE LGE
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRVLS-MDGYQNILDKKDELLGE 177


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 260 EKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGE 436
           +K  + ILD +++K   F     + V L + P+D    V          L   DE LGE
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRVLS-MDGYQNILDKKDELLGE 177


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +3

Query: 690 ICWFGIQVGSEPIWSTHILEVLSRVLK 770
           +CW  +  G  P W+    +V+  + K
Sbjct: 827 VCWEVMSYGERPYWNWSNQDVIKSIEK 853


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = -2

Query: 768 STPWITPQVCELTKLAHFQLECQTN-KWF 685
           S  WI   VC L +   F LE   N  W+
Sbjct: 158 SFAWIGSVVCSLPQTIVFHLETHPNVTWY 186


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 455 TPTVNDLKQALRRSTLKRH 511
           TPT   ++Q LRR+ ++R+
Sbjct: 161 TPTPTTVQQLLRRAQIRRN 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,131
Number of Sequences: 438
Number of extensions: 5398
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)