Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021034
(844 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 139 2e-33
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 139 2e-33
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 92 4e-19
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 61 1e-09
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 61 1e-09
At5g13650.2 68418.m01585 elongation factor family protein contai... 55 5e-08
At5g13650.1 68418.m01584 elongation factor family protein contai... 55 5e-08
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 55 7e-08
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 54 2e-07
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 52 4e-07
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 51 1e-06
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 51 1e-06
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 50 3e-06
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 44 1e-04
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 41 0.001
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 37 0.015
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 37 0.019
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 37 0.019
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 36 0.044
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 35 0.059
At2g27700.1 68415.m03356 eukaryotic translation initiation facto... 34 0.10
At5g46850.1 68418.m05773 expressed protein ; expression support... 30 2.2
At3g51270.1 68416.m05612 RIO1 family protein contains Pfam profi... 30 2.2
At2g31060.1 68415.m03790 elongation factor family protein contai... 30 2.2
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 29 2.9
At3g04990.1 68416.m00542 hypothetical protein 29 3.9
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 29 5.1
At4g04510.1 68417.m00654 protein kinase family protein contains ... 28 6.8
At5g53020.1 68418.m06585 expressed protein 28 8.9
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 8.9
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 28 8.9
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 139 bits (337), Expect = 2e-33
Identities = 65/102 (63%), Positives = 85/102 (83%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHVDFT+EVERALRVLDGAILVLCSVGGVQSQ++TV+RQM+RY VP +AFINKLDR+GA
Sbjct: 141 PGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRVAFINKLDRMGA 200
Query: 183 NPERVLKQMRSKLKHNAAFIHLPIA*KKSVKEFWTLLRRKLY 308
+P +VL Q R+KL+H++A + +PI +++ + L+ K Y
Sbjct: 201 DPWKVLNQARAKLRHHSAAVQVPIGLEENFQGLIDLIHVKAY 242
Score = 101 bits (241), Expect = 8e-22
Identities = 54/115 (46%), Positives = 71/115 (61%)
Frame = +1
Query: 499 IKTTFTPVLLGTALKNKGIQPLLDAVLTYLPHPGEVENTALLNESKDGEGQTIVLDPTRD 678
I F PV +G+A KNKG+QPLLD V+++LP P EV N A L+++ + E T+ P
Sbjct: 307 IAQKFVPVFMGSAFKNKGVQPLLDGVVSFLPSPNEVNNYA-LDQNNNEERVTLTGSP--- 362
Query: 679 NKKPFVGLAFKLEVSQFGQLTYLRCYPGC*REVTIYSTPGLTKKVKISRLVRMHS 843
P V LAFKLE +FGQLTYLR Y G ++ K++K+ RLVRMHS
Sbjct: 363 -DGPLVALAFKLEEGRFGQLTYLRVYEGVIKKGDFIINVNTGKRIKVPRLVRMHS 416
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/90 (38%), Positives = 57/90 (63%)
Frame = +2
Query: 257 LEKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGE 436
LE+ QG++DL+ KA +F G GE+V +IP D V ++R ELIE +S VD+ L E
Sbjct: 226 LEENFQGLIDLIHVKAYFFHGSSGENVVAGDIPADMEGLVGDKRRELIETVSEVDDVLAE 285
Query: 437 LFLEEKTPTVNDLKQALRRSTLKRHSLQCF 526
FL ++ + +L++A+RR+T+ + + F
Sbjct: 286 KFLNDEPVSAAELEEAIRRATIAQKFVPVF 315
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 139 bits (337), Expect = 2e-33
Identities = 65/102 (63%), Positives = 85/102 (83%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHVDFT+EVERALRVLDGAILVLCSVGGVQSQ++TV+RQM+RY VP +AFINKLDR+GA
Sbjct: 141 PGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRVAFINKLDRMGA 200
Query: 183 NPERVLKQMRSKLKHNAAFIHLPIA*KKSVKEFWTLLRRKLY 308
+P +VL Q R+KL+H++A + +PI +++ + L+ K Y
Sbjct: 201 DPWKVLNQARAKLRHHSAAVQVPIGLEENFQGLIDLIHVKAY 242
Score = 103 bits (247), Expect = 1e-22
Identities = 55/115 (47%), Positives = 72/115 (62%)
Frame = +1
Query: 499 IKTTFTPVLLGTALKNKGIQPLLDAVLTYLPHPGEVENTALLNESKDGEGQTIVLDPTRD 678
I TF PV +G+A KNKG+QPLLD V+++LP P EV N A L+++ + E T+ P
Sbjct: 307 IAQTFVPVFMGSAFKNKGVQPLLDGVVSFLPSPNEVNNYA-LDQNNNEERVTLTGSP--- 362
Query: 679 NKKPFVGLAFKLEVSQFGQLTYLRCYPGC*REVTIYSTPGLTKKVKISRLVRMHS 843
P V LAFKLE +FGQLTYLR Y G ++ K++K+ RLVRMHS
Sbjct: 363 -DGPLVALAFKLEEGRFGQLTYLRVYEGVIKKGDFIINVNTGKRIKVPRLVRMHS 416
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/90 (40%), Positives = 58/90 (64%)
Frame = +2
Query: 257 LEKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGE 436
LE+ QG++DL+ KA +F G GE+V +IP D V E+R ELIE +S VD+ L E
Sbjct: 226 LEENFQGLIDLIHVKAYFFHGSSGENVVAGDIPADMEGLVAEKRRELIETVSEVDDVLAE 285
Query: 437 LFLEEKTPTVNDLKQALRRSTLKRHSLQCF 526
FL ++ + ++L++A+RR+T+ + + F
Sbjct: 286 KFLNDEPVSASELEEAIRRATIAQTFVPVF 315
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 92.3 bits (219), Expect = 4e-19
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHVDFT+EVERALRVLDGAI + SV GV+ Q+ TV RQ +Y VP + F+NK+DRLGA
Sbjct: 169 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 228
Query: 183 NPERVLKQMRSKLKHNAAFIHLPIA*KKSVKEFWTLLRRKLYI 311
N R + + L + +PI + K L+R K +
Sbjct: 229 NFFRTRDMIVTNLGAKPLVLQIPIGAEDVFKGVVDLVRMKAIV 271
Score = 81.4 bits (192), Expect = 7e-16
Identities = 47/112 (41%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Frame = +1
Query: 511 FTPVLLGTALKNKGIQPLLDAVLTYLPHPGEVENTALLNESKDGEGQTIVLDPTRDNKKP 690
F P+L G+A KNKG+QPLLDAV+ YLP P EV D E I + D+ +P
Sbjct: 340 FVPILCGSAFKNKGVQPLLDAVVDYLPSPVEVPPM----NGTDPENPEITIIRKPDDDEP 395
Query: 691 FVGLAFKLEVSQF-GQLTYLRCYPGC*REVTIYSTPGLTKKVKISRLVRMHS 843
F GLAFK+ F G LT++R Y G + KK +I RL+ MH+
Sbjct: 396 FAGLAFKIMSDPFVGSLTFVRVYSGKISAGSYVLNANKGKKERIGRLLEMHA 447
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +2
Query: 272 QGILDLVEEKAIYFDGE-YGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGELFLE 448
+G++DLV KAI + GE G ++IP+D +E R ++E + ++D+ + E +LE
Sbjct: 259 KGVVDLVRMKAIVWSGEELGAKFSYEDIPEDLEDLAQEYRAAMMELIVDLDDEVMENYLE 318
Query: 449 EKTPTVNDLKQALRRSTL 502
P +K+ +R+ T+
Sbjct: 319 GVEPDEATVKRLVRKGTI 336
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/71 (43%), Positives = 45/71 (63%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHVDF+ EV R+L GA+LV+ + GVQ+QT+ N+ + INK+D+ A
Sbjct: 143 PGHVDFSYEVSRSLSACQGALLVVDAAQGVQAQTVANFYLAFEANLTIVPVINKIDQPTA 202
Query: 183 NPERVLKQMRS 215
+PERV Q++S
Sbjct: 203 DPERVKAQLKS 213
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/69 (42%), Positives = 45/69 (65%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHVDF+ EV R+L +GA+LV+ + GV++QTL N+ + +NK+D GA
Sbjct: 160 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA 219
Query: 183 NPERVLKQM 209
PE+VL+++
Sbjct: 220 EPEKVLREI 228
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH DF EVER L ++DG +LV+ SV G QT V ++ + + +NK+DR A
Sbjct: 154 PGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA 213
Query: 183 NPERVL 200
PE V+
Sbjct: 214 RPEFVV 219
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH DF EVER L ++DG +LV+ SV G QT V ++ + + +NK+DR A
Sbjct: 153 PGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA 212
Query: 183 NPERVL 200
PE V+
Sbjct: 213 RPEFVV 218
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/72 (40%), Positives = 39/72 (54%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH F+ R V D +LV+ + GV QTL + NVP + INK D+ GA
Sbjct: 276 PGHAAFSEMRARGAAVTDIVVLVVAADDGVMPQTLEAIAHARSANVPVVVAINKCDKPGA 335
Query: 183 NPERVLKQMRSK 218
NPE+V Q+ S+
Sbjct: 336 NPEKVKYQLTSE 347
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/57 (47%), Positives = 37/57 (64%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDR 173
PGHVDF+ EV ALR+ DGA++V+ + GV QT TV RQ + + +NK+DR
Sbjct: 106 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGH F R RV D AI+V+ + G++ QT K VP + INK+D+ GA
Sbjct: 560 PGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAAVPIVIAINKIDKEGA 619
Query: 183 NPERVLKQMRS 215
+P+RV++++ S
Sbjct: 620 SPDRVMQELSS 630
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHV+F+ E+ +LR+ DGA+L++ + GV T R + ++P + INK+DRL
Sbjct: 217 PGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLIT 276
Query: 183 NPERVLKQMRSKLKHNAAFIH 245
+ + KL+H I+
Sbjct: 277 ELKLPPRDAYYKLRHTIEVIN 297
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGA 182
PGHV+F+ E+ +LR+ DGA+L++ + GV T R + ++P + INK+DRL
Sbjct: 217 PGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLIT 276
Query: 183 NPERVLKQMRSKLKHNAAFIH 245
+ + KL+H I+
Sbjct: 277 ELKLPPRDAYYKLRHTIEVIN 297
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 49.6 bits (113), Expect = 3e-06
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNV-PCLAFINKLDRL 176
PGH+DF EV A R+ DGA++++ +V GV QT V RQ + PCL +NK+DRL
Sbjct: 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLV-LNKIDRL 139
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PG+V+F+ E+ +LR+ DGA+ ++ + GV T R + ++P + INK+DRL
Sbjct: 203 PGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAIQDHLPIVVVINKVDRL 260
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGH FT R + D AILV+ + G++ QT+ ++R NV + +NK+DRL
Sbjct: 564 PGHESFTNLRSRGSNLCDLAILVVDIMRGLEPQTIESLNLLRRRNVKFIIALNKVDRL 621
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGH FT R + D AILV+ G+Q QT+ ++ N + +NK+DRL
Sbjct: 117 PGHESFTNLRSRGSSLCDLAILVVDITHGLQPQTIESLNLLRMRNTEFIIALNKVDRL 174
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 36.7 bits (81), Expect = 0.019
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCL-AFINKLDRLG 179
PGH D+ + +DG ILV+ G QT ++ VP L F+NK+D +
Sbjct: 138 PGHADYVKNMITGAAQMDGGILVVSGPDGPMPQTKEHILLARQVGVPSLVCFLNKVDVVD 197
Query: 180 ANPERVLKQMRSKLKHNAAFIHLP 251
+PE +L+ + +L+ +F P
Sbjct: 198 -DPE-LLELVEMELRELLSFYKFP 219
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGH FT R + D AILV+ + G++ QT+ ++ N + +NK+DRL
Sbjct: 776 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRL 833
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 35.5 bits (78), Expect = 0.044
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVP-CLAFINKLDRL 176
PGH D+ + +DGAILV+ G QT K+ VP + F+NK D++
Sbjct: 150 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPDMVVFLNKEDQV 208
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 35.1 bits (77), Expect = 0.059
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PGH FT R + D AILV+ G++ QT+ ++ N + +NK+DRL
Sbjct: 709 PGHESFTNLRSRGSSLCDLAILVVDIKHGLEPQTIESLNLLRMRNTEFIIALNKVDRL 766
>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|P39730 Translation initiation factor IF-2
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00009: Elongation factor Tu GTP binding domain,
PF03144: Elongation factor Tu domain 2
Length = 479
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
PG+ +T R L + D AILV+ + G++ QT+ ++ N + +NK+DRL
Sbjct: 106 PGYEFYTNLRSRGLGLCDFAILVVDIMHGLEPQTIECLNLLRMKNTEFIIALNKVDRL 163
>At5g46850.1 68418.m05773 expressed protein ; expression supported
by MPSS
Length = 296
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 525 SGYSSKE*GNSTLTGCCAHISTASRRSRKHCLV 623
SGYS E G L C +H+ RR R+ CLV
Sbjct: 203 SGYSRVEFGEPDLFLCSSHVQN-QRRERRRCLV 234
>At3g51270.1 68416.m05612 RIO1 family protein contains Pfam profile
PF01163: RIO1 family
Length = 472
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 162 KLDRLGANPERVLKQMRSKLKHNAAFIHLPIA*KKSVKEF 281
KL RLG R +K R L+H ++F L ++ ++KEF
Sbjct: 132 KLHRLGRTSFRAVKSKRDYLRHRSSFSWLYLSRLAALKEF 171
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 48 VLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGANPER 194
+++GAILV+ + G +QT V + +Y + + +NK+DR ER
Sbjct: 1 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEER 49
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +3
Query: 3 PGHVDFTVEVERALRVLDGAILVL-CSVG-------GVQSQTLTVNRQMKRYNV-PCLAF 155
PGH DF + D AILV+ SVG ++ QT R ++ + V +
Sbjct: 325 PGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVA 384
Query: 156 INKLDRLGANPER 194
INK+D +G + ER
Sbjct: 385 INKMDIVGYSKER 397
>At3g04990.1 68416.m00542 hypothetical protein
Length = 227
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +2
Query: 260 EKECQGILDLVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGEL 439
EKE Q + +E+K+ F+ E E L ++ ++ E++ +R+ L L ++ EL
Sbjct: 43 EKELQILSSDLEQKSHAFEAEKSEVGDLKKLVEECTEELRSKRNLLTVKLDSLIRVQREL 102
Query: 440 FLEEKTPTVNDLKQALRRSTLKRH 511
L++ V + + RR + RH
Sbjct: 103 ELKD-NQLVQVMAELKRRYSEARH 125
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 36 RALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 176
RA+R D LV+ ++ + Q L + +++R CL +NK D +
Sbjct: 450 RAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKWDTI 496
>At4g04510.1 68417.m00654 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 648
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 713 NLNAKPTNGFLLSLVGSNTMVWPSPSLLSFNKAVFSTSPGCG 588
N++ +PT ++ +GS T+ P P++ F A + G
Sbjct: 592 NVSKRPTMSLVIQWLGSETIAIPLPTVAGFTNASYQAEHEAG 633
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 287 LVEEKAIYFDGEYGEHVRLDEIPQDRRTEVKERRHELIEHLSNVDETLGELFLEEKTPTV 466
+ +K + YG ++++ + ++ R K +RH L+E + E G LE K +
Sbjct: 65 IASQKQNWLRERYGLRLQIEALMKELRNIEKRKRHSLLELQERLKEKEG--LLESKDKAI 122
Query: 467 NDLKQ 481
+ K+
Sbjct: 123 EEEKR 127
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 4706
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 677 SLVGSNTMVWPSPSLLSFNKAVFS 606
SL+ + W PSLL++N AVF+
Sbjct: 61 SLLSDSLAQWQGPSLLAYNDAVFT 84
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 568 DAVLTYLPHPGEVENTALLNESKDGEGQTIVLDPTRDNKK 687
D+ +T + + E EN A NE+ GEG IV R K
Sbjct: 1500 DSAVTEIVYSREEENGANANETNGGEGFVIVAKKRRRKNK 1539
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,739,902
Number of Sequences: 28952
Number of extensions: 397292
Number of successful extensions: 1050
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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